Browse Element(s) Details


Os.18752.1.S1_at

Description gb:AK073496.1
DB_XREF= gi:32983519
TID=Os.18752.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DHHC-type zinc finger protein (OSJNBa0015I18.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046O11, full insert sequence.
FL= gb:AK073496.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1918011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19140Os.46699.1.S1_at6/1110+9413046..9416353Cytochrome P450 87A3, putative, expressed
LOC_Os10g19150OsAffx.14524.1.S1_at3/1110+9422992..9423851retrotransposon protein, putative, unclassified
LOC_Os10g19160OsAffx.18298.1.S1_at11/1110+9425766..9429324Leucine Rich Repeat family protein
LOC_Os10g19180Os.18752.2.S1_x_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19180Os.18752.1.S1_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19190OsAffx.6701.1.S1_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19190OsAffx.6701.1.S1_s_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19200Os.46580.1.S1_at11/1110+9452629..9453271retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g19210OsAffx.8268.1.S1_at11/1110+9454128..9454472retrotransposon protein, putative, unclassified
LOC_Os10g19230OsAffx.20504.1.S1_x_at11/1110+9458096..9460390hypothetical protein
LOC_Os10g19240OsAffx.8267.1.S1_at9/1110+9465925..9467938retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18752.1.S1_at--489--1571Chr10:9444869..9444893 (25 bp)
AGCTAGTCATTTGCTGTGCTGCTAG
LOC_Os10g19180
Os.18752.1.S1_at--1061--7931Chr10:9444910..9444934 (25 bp)
GGATTTACTGACCTGTTACTGGTTA
LOC_Os10g19180
Os.18752.1.S1_at--1--10811Chr10:9444956..9444980 (25 bp)
TTGTGACCAATATCTGTTCCAGCCA
LOC_Os10g19180
Os.18752.1.S1_at--759--6691Chr10:9444971..9444995 (25 bp)
GTTCCAGCCAAGACAATTGCCTCAT
LOC_Os10g19180
Os.18752.1.S1_at--738--71Chr10:9444986..9445010 (25 bp)
ATTGCCTCATATTGGGTTTAGCTGC
LOC_Os10g19180
Os.18752.1.S1_at--741--6811Chr10:9445001..9445025 (25 bp)
GTTTAGCTGCTGTACTGCTCTAATT
LOC_Os10g19180
Os.18752.1.S1_at--469--211Chr10:9445023..9445047 (25 bp)
ATTTGCTCTCTTGCACTCAGTTTTG
LOC_Os10g19180
Os.18752.1.S1_at--3--9651Chr10:9445039..9445063 (25 bp)
TCAGTTTTGTACTCTCCGTGCTCAA
LOC_Os10g19180
Os.18752.1.S1_at--928--2071Chr10:9445086..9445110 (25 bp)
ACATTTGACGGATGGCATTCTTTCA
LOC_Os10g19180
Os.18752.1.S1_at--776--2491Chr10:9445110..9445134 (25 bp)
AACAGTTTGTTTTGCTAGAGCCCCT
LOC_Os10g19180
Os.18752.1.S1_at--79--9091Chr10:9445122..9445146 (25 bp)
TGCTAGAGCCCCTTTTTCATATGCA
LOC_Os10g19180
Target Sequence 
AGCTAGTCATTTGCTGTGCTGCTAGTTGTGAATGGGCTGTAGGATTTACTGACCTGTTACTGGTTAGAAGTAGTAGTGTT
GTTGCAATTGTGACCAATATCTGTTCCAGCCAAGACAATTGCCTCATATTGGGTTTAGCTGCTGTACTGCTCTAATTTGC
TCTCTTGCACTCAGTTTTGTACTCTCCGTGCTCAACCTGCATGGTTGACCATGGGATACATTTGACGGATGGCATTCTTT
CAACAGTTTGTTTTGCTAGAGCCCCTTTTTCATATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis