Browse Element(s) Details


OsAffx.8268.1.S1_at

Description gb:NM_195832.1
DB_XREF= gi:37533023
TID=OsAffx.8268.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015I18.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1921011/11retrotransposon protein, putative, unclassified
LOC_Os04g034201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19160OsAffx.18298.1.S1_at11/1110+9425766..9429324Leucine Rich Repeat family protein
LOC_Os10g19180Os.18752.2.S1_x_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19180Os.18752.1.S1_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19190OsAffx.6701.1.S1_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19190OsAffx.6701.1.S1_s_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19200Os.46580.1.S1_at11/1110+9452629..9453271retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g19210OsAffx.8268.1.S1_at11/1110+9454128..9454472retrotransposon protein, putative, unclassified
LOC_Os10g19230OsAffx.20504.1.S1_x_at11/1110+9458096..9460390hypothetical protein
LOC_Os10g19240OsAffx.8267.1.S1_at9/1110+9465925..9467938retrotransposon protein, putative, LINE subclass
LOC_Os10g19250OsAffx.20503.1.S1_at11/1110+9471708..9471978hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8268.1.S1_at--1079--8451Chr10:9454417..9454441 (25 bp)
TGGCCTCGCGCATCACGATGGATAG
LOC_Os10g19210
OsAffx.8268.1.S1_at--142--4591Chr10:9454410..9454434 (25 bp)
GCGCATCACGATGGATAGACACTTG
LOC_Os10g19210
OsAffx.8268.1.S1_at--303--6491Chr10:9454397..9454421 (25 bp)
GATAGACACTTGAGTCTCGTCCACA
LOC_Os10g19210
OsAffx.8268.1.S1_at--836--10771Chr10:9454388..9454412 (25 bp)
TTGAGTCTCGTCCACAAGTTCATGC
LOC_Os10g19210
OsAffx.8268.1.S1_at--202--4431Chr10:9454320..9454344 (25 bp)
GCGGTACCCGGATCGGTCCGTGCAC
LOC_Os10g19210
OsAffx.8268.1.S1_at--790--7672Chr10:9454274..9454298 (25 bp)
GGGTTGATTCCACCCTTCTCCAGCT
LOC_Os10g19210
OsAffx.8268.1.S1_at--635--1031Chr10:9454240..9454264 (25 bp)
AGGTCCTGGATTTCTACAGGATCCA
LOC_Os10g19210
OsAffx.8268.1.S1_at--530--191Chr10:9454231..9454255 (25 bp)
ATTTCTACAGGATCCACGCCTTGCA
LOC_Os10g19210
OsAffx.8268.1.S1_at--970--10731Chr10:9454211..9454235 (25 bp)
TTGCATCTCGCCTCCAACGCTATGA
LOC_Os10g19210
OsAffx.8268.1.S1_at--611--4471Chr10:9454202..9454226 (25 bp)
GCCTCCAACGCTATGATGACACTGG
LOC_Os10g19210
OsAffx.8268.1.S1_at--832--10111Chr10:9454191..9454215 (25 bp)
TATGATGACACTGGCCCCACTAAAA
LOC_Os10g19210
Target Sequence 
TGGCCTCGCGCATCACGATGGATAGACACTTGAGTCTCGTCCACAAGTTCATGCCGGAGGGCGCCGTCGTGAGGGCGGGG
GAGTCGCGGCCAAGGCCGCGGTACCCGGATCGGTCCGTGCACCTCCTGTCCTTCGCCATGGCGGGGTTGATTCCACCCTT
CTCCAGCTTCTTCCATGAGGTCCTGGATTTCTACAGGATCCACGCCTTGCATCTCGCCTCCAACGCTATGATGACACTGG
CCCCACTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis