Browse Element(s) Details


Os.31640.1.S1_at

Description gb:AK106994.1
DB_XREF= gi:32992203
TID=Os.31640.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-B07, full insert sequence.
FL= gb:AK106994.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2959011/11expressed protein
LOC_Os10g193001/11expressed protein
LOC_Os08g269801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29550Os.14087.1.S1_at11/112+17569259..17576355AP2 domain containing protein, expressed
LOC_Os02g29550Os.14602.1.S1_at9/112+17569259..17576355AP2 domain containing protein, expressed
LOC_Os02g29550OsAffx.32283.1.S1_at1/112+17569259..17576355AP2 domain containing protein, expressed
LOC_Os02g29570Os.27435.1.S1_x_at2/112+17582204..17588100retrotransposon protein, putative, unclassified
LOC_Os02g29580OsAffx.2795.1.S1_at11/112+17595066..17595673hypothetical protein
LOC_Os02g29590Os.31640.1.S1_at11/112+17600227..17601496expressed protein
LOC_Os02g29600OsAffx.12277.1.S1_at11/112+17603883..17608320hypothetical protein
LOC_Os02g29610OsAffx.24317.5.S1_x_at3/112+17609324..17610432hypothetical protein
LOC_Os02g29610OsAffx.24317.3.S1_at2/112+17609324..17610432hypothetical protein
LOC_Os02g29620OsAffx.25970.2.S1_s_at11/112+17611871..17613542expressed protein
LOC_Os02g29620OsAffx.25970.1.S1_at11/112+17611871..17613542expressed protein
LOC_Os02g29630OsAffx.24497.1.S1_at11/112+17614807..17619052retrotransposon protein, putative, unclassified
LOC_Os02g29640OsAffx.24317.6.S1_x_at3/112+17621553..17626299transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31640.1.S1_at--797--2371Chr02:17600927..17600951 (25 bp)
AAACGACCGCGGCTCCATGGCGTTG
LOC_Os02g29590
Os.31640.1.S1_at--413--871Chr02:17600943..17600967 (25 bp)
ATGGCGTTGGCGACCTTTGTCTTCT
LOC_Os02g29590
Os.31640.1.S1_at--332--5752Chr06:11155522..11155562 (25 bp)
GACGGAGCCCTCAGTTTGGTCGGCT
NONE
Os.31640.1.S1_at--1143--9291Chr02:17601078..17601102 (25 bp)
TCCGCGTTGGACACGTCGAGGCCAC
LOC_Os02g29590
Os.31640.1.S1_at--472--5891Chr02:17601119..17601143 (25 bp)
GAGCTCGGTCGGCTCTGATTCCCTT
LOC_Os02g29590
Os.31640.1.S1_at--703--9512Chr02:17601153..17601177 (25 bp)
TCTCTGTCTCTGTTTTCTTGTCGGC
LOC_Os02g29590
Os.31640.1.S1_at--259--10551Chr02:17601167..17601191 (25 bp)
TTCTTGTCGGCTGAGGGAGGTTAAC
LOC_Os02g29590
Os.31640.1.S1_at--428--7991Chr02:17601226..17601250 (25 bp)
GGATGGGTAGGTTCTTGACTGAAAA
LOC_Os02g29590
Os.31640.1.S1_at--620--9871Chr02:17601267..17601291 (25 bp)
TACAGGATTATTTCTTTTCCCATCT
LOC_Os02g29590
Os.31640.1.S1_at--933--10291Chr02:17601282..17601306 (25 bp)
TTTCCCATCTTCGTTAGTTCTTATA
LOC_Os02g29590
Os.31640.1.S1_at--825--154Chr10:9497418..9497442 (25 bp)
ATTATGTGTAGTTTGCTCTCAGAAA
LOC_Os10g19300
Target Sequence 
AAACGACCGCGGCTCCATGGCGTTGGCGACCTTTGTCTTCTCGGTGGCCGGCGATGGAGATGAGGGCGACGGAGCCCTCA
GTTTGGTCGGCTCTGGAGTGAGGAGTGGAGATGGACGACGCGGCTGGAAGAGTGGAGTGGAGAAGGCGAGCTCCGCGTTG
GACACGTCGAGGCCACGCGTCGAGCACGACCAGAGCTCGGTCGGCTCTGATTCCCTTCGCTCTCTCTCTCTGTCTCTGTT
TTCTTGTCGGCTGAGGGAGGTTAACAAGTGTAAGGACAAGCCAGTGAGATTGTCATGAGGGATGGGTAGGTTCTTGACTG
AAAATCGATTTTCAGTTATTTACAGGATTATTTCTTTTCCCATCTTCGTTAGTTCTTATATTAATTTATGGTGTAGATAA
ATCCATGTGGATTTTACTGGAGGTAGGTGAATATACCTAGTTTTTATTTTTTTTGGGTTGCACTAAAAAATTATGTGTAG
TTTGCTCTCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis