Browse Element(s) Details


OsAffx.2795.1.S1_at

Description tigr:9630.m02825
TID=OsAffx.2795.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2958011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29550Os.14087.1.S1_at11/112+17569259..17576355AP2 domain containing protein, expressed
LOC_Os02g29550Os.14602.1.S1_at9/112+17569259..17576355AP2 domain containing protein, expressed
LOC_Os02g29550OsAffx.32283.1.S1_at1/112+17569259..17576355AP2 domain containing protein, expressed
LOC_Os02g29570Os.27435.1.S1_x_at2/112+17582204..17588100retrotransposon protein, putative, unclassified
LOC_Os02g29580OsAffx.2795.1.S1_at11/112+17595066..17595673hypothetical protein
LOC_Os02g29590Os.31640.1.S1_at11/112+17600227..17601496expressed protein
LOC_Os02g29600OsAffx.12277.1.S1_at11/112+17603883..17608320hypothetical protein
LOC_Os02g29610OsAffx.24317.5.S1_x_at3/112+17609324..17610432hypothetical protein
LOC_Os02g29610OsAffx.24317.3.S1_at2/112+17609324..17610432hypothetical protein
LOC_Os02g29620OsAffx.25970.2.S1_s_at11/112+17611871..17613542expressed protein
LOC_Os02g29620OsAffx.25970.1.S1_at11/112+17611871..17613542expressed protein
LOC_Os02g29630OsAffx.24497.1.S1_at11/112+17614807..17619052retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2795.1.S1_at--211--8371Chr02:17595138..17595162 (25 bp)
GGCGATTCAGTTCAAGCTCCCAAAA
LOC_Os02g29580
OsAffx.2795.1.S1_at--1135--8131Chr02:17595176..17595340 (25 bp)
GGACAACCGTCCTAGGGACTACCAG
LOC_Os02g29580
OsAffx.2795.1.S1_at--696--9971Chr02:17595335..17595359 (25 bp)
TACCAGAAAGCTCACCAAGCAGCGA
LOC_Os02g29580
OsAffx.2795.1.S1_at--1039--2711Chr02:17595351..17595375 (25 bp)
AAGCAGCGAACACGGCTCAGCACGG
LOC_Os02g29580
OsAffx.2795.1.S1_at--352--3751Chr02:17595366..17595390 (25 bp)
CTCAGCACGGTCTTGGCGATGGAGA
LOC_Os02g29580
OsAffx.2795.1.S1_at--1006--4831Chr02:17595414..17595438 (25 bp)
GCTACGGTTGTCGTTGGCGGTACAC
LOC_Os02g29580
OsAffx.2795.1.S1_at--489--2171Chr02:17595435..17595459 (25 bp)
ACACCTCCGGTCTTGATCTATTCAA
LOC_Os02g29580
OsAffx.2795.1.S1_at--146--851Chr02:17595484..17595508 (25 bp)
ATGGCACAAGACAGATTTAGGCGAA
LOC_Os02g29580
OsAffx.2795.1.S1_at--300--4591Chr02:17595504..17595528 (25 bp)
GCGAAAAAGCTTGCGCCGAAGCTCA
LOC_Os02g29580
OsAffx.2795.1.S1_at--608--2791Chr02:17595579..17595603 (25 bp)
AAGATGGAGATCTCCCACCATGGTT
LOC_Os02g29580
OsAffx.2795.1.S1_at--1135--1871Chr02:17595608..17595632 (25 bp)
ACGTGCCTATTCCTTCGGGATTCTT
LOC_Os02g29580
Target Sequence 
GGCGATTCAGTTCAAGCTCCCAAAACAAAAGGTGTAGAGGACAACCGTCCTAGGGACTACCAGAAAGCTCACCAAGCAGC
GAACACGGCTCAGCACGGTCTTGGCGATGGAGAGCTGGTCTGGCAGCGGCGCAGCGGCTACGGTTGTCGTTGGCGGTACA
CCTCCGGTCTTGATCTATTCAAAGAGAAGGCATGCATCGATTTGAGATGGCACAAGACAGATTTAGGCGAAAAAGCTTGC
GCCGAAGCTCACCAGAGAAGGAAGAAGAGAGGAATGGCGTGGGCGGCCGGAGTTGGGGAAGAAGATGGAGATCTCCCACC
ATGGTTCACCACGTGCCTATTCCTTCGGGATTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis