Browse Element(s) Details


OsAffx.24497.1.S1_at

Description tigr:9630.m02831
TID=OsAffx.24497.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2963011/11retrotransposon protein, putative, unclassified
LOC_Os08g226401/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29580OsAffx.2795.1.S1_at11/112+17595066..17595673hypothetical protein
LOC_Os02g29590Os.31640.1.S1_at11/112+17600227..17601496expressed protein
LOC_Os02g29600OsAffx.12277.1.S1_at11/112+17603883..17608320hypothetical protein
LOC_Os02g29610OsAffx.24317.5.S1_x_at3/112+17609324..17610432hypothetical protein
LOC_Os02g29610OsAffx.24317.3.S1_at2/112+17609324..17610432hypothetical protein
LOC_Os02g29620OsAffx.25970.2.S1_s_at11/112+17611871..17613542expressed protein
LOC_Os02g29620OsAffx.25970.1.S1_at11/112+17611871..17613542expressed protein
LOC_Os02g29630OsAffx.24497.1.S1_at11/112+17614807..17619052retrotransposon protein, putative, unclassified
LOC_Os02g29640OsAffx.24317.6.S1_x_at3/112+17621553..17626299transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24497.1.S1_at--632--6591Chr02:17618148..17618172 (25 bp)
GATTGAATCTTCATCCTCTGTTCAG
LOC_Os02g29630
OsAffx.24497.1.S1_at--770--6431Chr02:17618124..17618148 (25 bp)
GATCATCAAGCAGCCATCTGGTCAG
LOC_Os02g29630
OsAffx.24497.1.S1_at--1114--1251Chr02:17618101..17618125 (25 bp)
AGATAGTCCCATACAGCTTGCCAAT
LOC_Os02g29630
OsAffx.24497.1.S1_at--297--8951Chr02:17618073..17618097 (25 bp)
TGAACTGCCTTTTTTCAGGTTCCCT
LOC_Os02g29630
OsAffx.24497.1.S1_at--190--1411Chr02:17618012..17618036 (25 bp)
AGACTCCTTCTGTTGGCTGTGAACC
LOC_Os02g29630
OsAffx.24497.1.S1_at--194--8971Chr02:17617993..17618017 (25 bp)
TGAACCCCACTATGTTCCAATGCAT
LOC_Os02g29630
OsAffx.24497.1.S1_at--643--3011Chr02:17617975..17617999 (25 bp)
AATGCATCACCCAAACGATTCCATG
LOC_Os02g29630
OsAffx.24497.1.S1_at--703--4031Chr02:17617960..17617984 (25 bp)
CGATTCCATGGAACACCGTCAAGAT
LOC_Os02g29630
OsAffx.24497.1.S1_at--819--6451Chr02:17617938..17617962 (25 bp)
GATCAACTGGGTTGTCATTCCCTAT
LOC_Os02g29630
OsAffx.24497.1.S1_at--937--10111Chr02:17617916..17617940 (25 bp)
TATGTGCTCCCTTGGTGCATTCAAA
LOC_Os02g29630
OsAffx.24497.1.S1_at--72--5593Chr01:13295283..13295304 (22 bp)
GAAATGTGGCATGCTTCCTGAGGAA
NONE
Target Sequence 
GATTGAATCTTCATCCTCTGTTCAGATCATCAAGCAGCCATCTGGTCAGATAGTCCCATACAGCTTGCCAATCCCTGAAC
TGCCTTTTTTCAGGTTCCCTGAAAAGTTCTGTTATGCAGTTGCATTTGGAGTATTCAGACTCCTTCTGTTGGCTGTGAAC
CCCACTATGTTCCAATGCATCACCCAAACGATTCCATGGAACACCGTCAAGATCAACTGGGTTGTCATTCCCTATGTGCT
CCCTTGGTGCATTCAAAGTCCTGCTAAGCGTCAAAGAATCTCTATTGCTGGAAAAAAATTGAGGAAGCAGAAGAAACAGG
CCCAGCTCTCTGTTGAGGGTCTGAGAAGAAGCCCAAGGTTTGCAAACAAGGGGGAGAAACTTGATCTAACTTGTGATGTC
CCTAAAAAGAAGTCCAAGGTGAAGCCGATGGTGCCAGCTTTCAAGCCCAGCAAGGAGGACAGGTCCAACCATCTTCCACC
AGCCATCCCAGTGGCCCAGCTGCAAAAAATAGGCGTGGAGAAATGTGGCATGCTTCCTGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis