Browse Element(s) Details


OsAffx.25970.1.S1_at

Description tigr:9630.m02829
TID=OsAffx.25970.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2962011/11expressed protein
LOC_Os04g108703/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29570Os.27435.1.S1_x_at2/112+17582204..17588100retrotransposon protein, putative, unclassified
LOC_Os02g29580OsAffx.2795.1.S1_at11/112+17595066..17595673hypothetical protein
LOC_Os02g29590Os.31640.1.S1_at11/112+17600227..17601496expressed protein
LOC_Os02g29600OsAffx.12277.1.S1_at11/112+17603883..17608320hypothetical protein
LOC_Os02g29610OsAffx.24317.5.S1_x_at3/112+17609324..17610432hypothetical protein
LOC_Os02g29610OsAffx.24317.3.S1_at2/112+17609324..17610432hypothetical protein
LOC_Os02g29620OsAffx.25970.2.S1_s_at11/112+17611871..17613542expressed protein
LOC_Os02g29620OsAffx.25970.1.S1_at11/112+17611871..17613542expressed protein
LOC_Os02g29630OsAffx.24497.1.S1_at11/112+17614807..17619052retrotransposon protein, putative, unclassified
LOC_Os02g29640OsAffx.24317.6.S1_x_at3/112+17621553..17626299transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25970.1.S1_at--190--6593Chr02:17611901..17611925 (25 bp)
GATTCCGCCGTTCAGGTATATCCCG
LOC_Os02g29620
OsAffx.25970.1.S1_at--988--4473Chr02:17611907..17611931 (25 bp)
GCCGTTCAGGTATATCCCGAAGCAG
LOC_Os02g29620
OsAffx.25970.1.S1_at--470--3473Chr02:17611913..17611933 (21 bp)
CAGGTATATCCCGAAGCAGAGCTTG
LOC_Os02g29620
OsAffx.25970.1.S1_at--257--2511Chr02:17613208..17613232 (25 bp)
AACATCCATTTTATAATGAGGACGG
LOC_Os02g29620
OsAffx.25970.1.S1_at--200--9751Chr02:17613221..17613245 (25 bp)
TAATGAGGACGGATTTTAGGGACTG
LOC_Os02g29620
OsAffx.25970.1.S1_at--69--3971Chr02:17613230..17613358 (25 bp)
CGGATTTTAGGGACTGGCAGATGAT
LOC_Os02g29620
OsAffx.25970.1.S1_at--166--8671Chr02:17613365..17613389 (25 bp)
TGTGGTTGTGGATGGCGAAGAGCTA
LOC_Os02g29620
OsAffx.25970.1.S1_at--233--5371Chr02:17613381..17613405 (25 bp)
GAAGAGCTAATGCACAACCCTCAGC
LOC_Os02g29620
OsAffx.25970.1.S1_at--840--3011Chr02:17613423..17613447 (25 bp)
AATGCCAGCAATACGTCACAGGATG
LOC_Os02g29620
OsAffx.25970.1.S1_at--888--9191Chr02:17613425..17613449 (25 bp)
TGCCAGCAATACGTCACAGGATGAG
LOC_Os02g29620
OsAffx.25970.1.S1_at--283--3191Chr02:17613431..17613455 (25 bp)
CAATACGTCACAGGATGAGGAGGCG
LOC_Os02g29620
Target Sequence 
GATTCCGCCGTTCAGGTATATCCCGAAGCAGAGCTTGATGATTTAACATGTGGCGATGAAAATATGTTAGCCATGTCTAA
TGTTCTAAAGAACAAAAAATCTGCAAGGCTCAAAAACCTTGTGTTGGCTAGAAATTCATTTTCCATAACTGTATACAACA
TAAATACTTTGTCAAATCTTGTTTATGTTGGAAGGGTACAAATAACTGTGGATGGTGATGGCCGTCATATTGTATACCCA
AGGAATGCACCAACGGCAGAAGACATAGCTAGTGGAAAGGTAAAAAACATCCATTTTATAATGAGGACGGATTTTAGGGA
CTGGCAGATGATGAAAGATGTGGTTGTGGATGGCGAAGAGCTAATGCACAACCCTCAGCTCACCACACATGGCACCAATG
CCAGCAATACGTCACAGGATGAGGAGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis