Browse Element(s) Details


OsAffx.25970.2.S1_s_at

Description tigr:9632.m00961
TID=OsAffx.25970.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2962011/11expressed protein
LOC_Os04g1087011/11hypothetical protein
LOC_Os07g010101/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29570Os.27435.1.S1_x_at2/112+17582204..17588100retrotransposon protein, putative, unclassified
LOC_Os02g29580OsAffx.2795.1.S1_at11/112+17595066..17595673hypothetical protein
LOC_Os02g29590Os.31640.1.S1_at11/112+17600227..17601496expressed protein
LOC_Os02g29600OsAffx.12277.1.S1_at11/112+17603883..17608320hypothetical protein
LOC_Os02g29610OsAffx.24317.5.S1_x_at3/112+17609324..17610432hypothetical protein
LOC_Os02g29610OsAffx.24317.3.S1_at2/112+17609324..17610432hypothetical protein
LOC_Os02g29620OsAffx.25970.2.S1_s_at11/112+17611871..17613542expressed protein
LOC_Os02g29620OsAffx.25970.1.S1_at11/112+17611871..17613542expressed protein
LOC_Os02g29630OsAffx.24497.1.S1_at11/112+17614807..17619052retrotransposon protein, putative, unclassified
LOC_Os02g29640OsAffx.24317.6.S1_x_at3/112+17621553..17626299transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25970.2.S1_s_at--432--332Chr02:17612995..17613019 (25 bp)
ATACTTTGTCAAATCTTGTTTATGT
LOC_Os02g29620
OsAffx.25970.2.S1_s_at--235--432Chr02:17613007..17613031 (25 bp)
ATCTTGTTTATGTTGGAAGGGTACA
LOC_Os02g29620
OsAffx.25970.2.S1_s_at--212--2892Chr02:17613023..17613047 (25 bp)
AAGGGTACAAATAACTGTGGATGGT
LOC_Os02g29620
OsAffx.25970.2.S1_s_at--380--8672Chr02:17613038..17613062 (25 bp)
TGTGGATGGTGATGGCCGTCATATT
LOC_Os02g29620
OsAffx.25970.2.S1_s_at--827--7392Chr02:17613046..17613066 (21 bp)
GTGATGGCCGTCATATTGTATACCC
LOC_Os02g29620
OsAffx.25970.2.S1_s_at--548--6232Chr02:17613048..17613163 (25 bp)
GATGGCCGTCATATTGTATACCCAA
LOC_Os02g29620
OsAffx.25970.2.S1_s_at--353--8413Chr07:817..932 (25 bp)
GGCCGTCATATTGTATACCCAAGGA
LOC_Os07g01010
OsAffx.25970.2.S1_s_at--718--6892Chr02:17613158..17613178 (21 bp)
GTATACCCAAGGAATGCACCAACGG
LOC_Os02g29620
OsAffx.25970.2.S1_s_at--16--9952Chr02:17613158..17613181 (24 bp)
TACCCAAGGAATGCACCAACGGCAG
LOC_Os02g29620
OsAffx.25970.2.S1_s_at--744--932Chr02:17613163..17613187 (25 bp)
AGGAATGCACCAACGGCAGAAGACA
LOC_Os02g29620
OsAffx.25970.2.S1_s_at--842--1932Chr02:17613175..17613199 (25 bp)
ACGGCAGAAGACATAGCTAGTGGAA
LOC_Os02g29620
Target Sequence 
ATACTTTGTCAAATCTTGTTTATGTTGGAAGGGTACAAATAACTGTGGATGGTGATGGCCGTCATATTGTATACCCAAGG
AATGCACCAACGGCAGAAGACATAGCTAGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25970.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis