Browse Element(s) Details


OsAffx.12277.1.S1_at

Description tigr:9630.m02827
TID=OsAffx.12277.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2960011/11hypothetical protein
LOC_Os11g432601/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29570Os.27435.1.S1_x_at2/112+17582204..17588100retrotransposon protein, putative, unclassified
LOC_Os02g29580OsAffx.2795.1.S1_at11/112+17595066..17595673hypothetical protein
LOC_Os02g29590Os.31640.1.S1_at11/112+17600227..17601496expressed protein
LOC_Os02g29600OsAffx.12277.1.S1_at11/112+17603883..17608320hypothetical protein
LOC_Os02g29610OsAffx.24317.5.S1_x_at3/112+17609324..17610432hypothetical protein
LOC_Os02g29610OsAffx.24317.3.S1_at2/112+17609324..17610432hypothetical protein
LOC_Os02g29620OsAffx.25970.2.S1_s_at11/112+17611871..17613542expressed protein
LOC_Os02g29620OsAffx.25970.1.S1_at11/112+17611871..17613542expressed protein
LOC_Os02g29630OsAffx.24497.1.S1_at11/112+17614807..17619052retrotransposon protein, putative, unclassified
LOC_Os02g29640OsAffx.24317.6.S1_x_at3/112+17621553..17626299transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042335biological_processcuticle biosynthesis
GO:0003824molecular_functioncatalytic activity
GO:0009924molecular_functionoctadecanal decarbonylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12277.1.S1_at--1091--6131Chr02:17606535..17606559 (25 bp)
GAGGTGCTAAAGTTTTCAGCCTTGG
LOC_Os02g29600
OsAffx.12277.1.S1_at--984--9651Chr02:17606521..17606544 (24 bp)
TCAGCCTTGGACTCCTAAACCAGGG
LOC_Os02g29600
OsAffx.12277.1.S1_at--819--9831Chr02:17606332..17606529 (25 bp)
TAAACCAGGGCAGCAGCCTAGCAGC
LOC_Os02g29600
OsAffx.12277.1.S1_at--480--7511Chr02:17606303..17606327 (25 bp)
GTGGTTTCCAATAGTGTAGCCTCAA
LOC_Os02g29600
OsAffx.12277.1.S1_at--486--6971Chr02:17606288..17606312 (25 bp)
GTAGCCTCAAGGACAGACCAAGTTA
LOC_Os02g29600
OsAffx.12277.1.S1_at--284--3071Chr02:17606252..17606276 (25 bp)
AATCTTGACAAGGTGGCTCGAGCCG
LOC_Os02g29600
OsAffx.12277.1.S1_at--113--4811Chr02:17606237..17606261 (25 bp)
GCTCGAGCCGTTGCTATGGCATTAT
LOC_Os02g29600
OsAffx.12277.1.S1_at--741--4071Chr02:17604118..17604138 (21 bp)
CGACGGTCGAACTGACTGTTGAGAA
LOC_Os02g29600
OsAffx.12277.1.S1_at--666--6651Chr02:17604101..17604125 (25 bp)
GTTGAGAAACAGTCCTCCCAAGAGG
LOC_Os02g29600
OsAffx.12277.1.S1_at--71--3471Chr02:17603991..17604015 (25 bp)
CAGTGTTCCCTGGAAGCTTGGGTTT
LOC_Os02g29600
OsAffx.12277.1.S1_at--253--10132Chr11:25594016..25594039 (24 bp)
TATGCACGCCTTAAGGAACAACTTC
LOC_Os11g43260
Target Sequence 
GAGGTGCTAAAGTTTTCAGCCTTGGACTCCTAAACCAGGGCAGCAGCCTAGCAGCTGCGGTGGTTTCCAATAGTGTAGCC
TCAAGGACAGACCAAGTTATTCTTGCAGGAAATCTTGACAAGGTGGCTCGAGCCGTTGCTATGGCATTATGCAAGAGAAA
TGTCAAGATCCGATGGGAAGCGCTGGAGGTGTCGGTCGCGAAAGGGATTATGTGGCGGCAGCGCGGACACCGAGGAATGG
ATGGGGGCGACATCGGCGATGGCGAGGCAAGGGCGACGGTCGAACTGACTGTTGAGAAACAGTCCTCCCAAGAGGTCTCC
TCACAAAGTCGCGAGGATGACGTCCTCACGAAAGCGTTGGGAACCGAAGAACACCGTGGACGGACAAGGGGAATTGGATC
CAGTGTTCCCTGGAAGCTTGGGTTTCCCCAATACGCGTGGCAGTACAAGAAGCACAAGCTTTCAAAGGCACAGAAATATG
CACGCCTTAAGGAACAACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis