Browse Element(s) Details


Os.14602.1.S1_at

Description gb:BI806636
DB_XREF= gi:15853840
DB_XREF=S070E03
CLONE=S070E03
TID=Os.14602.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14602 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g295509/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29530Os.7819.1.S1_at11/112+17553350..17556934Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os02g29540OsAffx.2794.1.S1_at11/112+17558469..17558870hypothetical protein
LOC_Os02g29550Os.14087.1.S1_at11/112+17569259..17576355AP2 domain containing protein, expressed
LOC_Os02g29550Os.14602.1.S1_at9/112+17569259..17576355AP2 domain containing protein, expressed
LOC_Os02g29550OsAffx.32283.1.S1_at1/112+17569259..17576355AP2 domain containing protein, expressed
LOC_Os02g29570Os.27435.1.S1_x_at2/112+17582204..17588100retrotransposon protein, putative, unclassified
LOC_Os02g29580OsAffx.2795.1.S1_at11/112+17595066..17595673hypothetical protein
LOC_Os02g29590Os.31640.1.S1_at11/112+17600227..17601496expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14602.1.S1_at--142--7891Chr02:17572257..17572281 (25 bp)
GGTTAGCTCCTGACATCACAGGTCA
LOC_Os02g29550
Os.14602.1.S1_at--769--5671Chr02:17572268..17572292 (25 bp)
GACATCACAGGTCATGTTGGACACA
LOC_Os02g29550
Os.14602.1.S1_at--471--3491Chr02:17572280..17572304 (25 bp)
CATGTTGGACACACCTGGGTCTTTG
LOC_Os02g29550
Os.14602.1.S1_at--142--691Chr02:17572318..17572342 (25 bp)
ATGAGCCATTTCGTGGATGTGCCCA
LOC_Os02g29550
Os.14602.1.S1_at--933--7991Chr02:17572332..17572357 (25 bp)
GGATGTGCCCACAGAGTCTCAATGC
LOC_Os02g29550
Os.14602.1.S1_at--1104--1331Chr02:17572348..17572369 (22 bp)
AGAGTCTCAATGCACCATTTCCATC
LOC_Os02g29550
Os.14602.1.S1_at--176--3611Chr02:17572371..17572395 (25 bp)
CATTGTCGGAATGAGGCAAACCTGT
LOC_Os02g29550
Os.14602.1.S1_at--362--2391NONE
AAACATGCGTTTACATGGTGGAAGA
NONE
Os.14602.1.S1_at--470--2791Chr02:17572423..17572448 (25 bp)
AAGAGTGCTCAATTTGTCCAATTAC
LOC_Os02g29550
Os.14602.1.S1_at--864--7411NONE
GTGTTAAATGTCACAAGCTGCGTTT
NONE
Os.14602.1.S1_at--214--4771Chr02:17572488..17572513 (25 bp)
GCTGCGTTTTACATGAACAGATGGT
LOC_Os02g29550
Target Sequence 
GGTTAGCTCCTGACATCACAGGTCATGTTGGACACACCTGGGTCTTTGNGTCACATGGANATATGAGCCATTTCGTGGAT
GTGCCCACAGAGTCTCAATGCACCATTTCCATCTCATTGTCGGAATGAGGCAAACCTGTNACCCATAAACATGCGTTTAC
ATGGTGGAAGAGTGCTCAATTTGTCCAATTACATGGTGGAAGATGATATTTTAATGTGTTAAATGTCACAAGCTGCGTTT
TACATGAACAGATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis