Browse Element(s) Details


Os.12308.3.S1_x_at

Description gb:AK120847.1
DB_XREF= gi:37990470
TID=Os.12308.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12308 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023023A10, full insert sequence.
FL= gb:AK120847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g193003/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19250OsAffx.20503.1.S1_at11/1110+9471708..9471978hypothetical protein
LOC_Os10g19270Os.52238.1.S1_at4/1110+9482486..9485306retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g19280NANA10+9490426..9492119retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19290NANA10+9493260..9494777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19300OsAffx.20499.2.S1_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.8265.1.A1_x_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.8265.1.A1_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.20499.1.S1_at10/1110+9496961..9500354expressed protein
LOC_Os10g19300Os.12308.3.S1_x_at3/1110+9496961..9500354expressed protein
LOC_Os10g19300Os.31640.1.S1_at1/1110+9496961..9500354expressed protein
LOC_Os10g19310OsAffx.8264.1.S1_at11/1110+9506620..9509870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19314Os.51388.1.S1_at1/1110+9512865..9513176hypothetical protein
LOC_Os10g19318NANA10+9514123..9514413hypothetical protein
LOC_Os10g19322NANA10+9515290..9518594transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19326Os.47463.1.S1_x_at5/1110+9521857..9525557transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19326Os.14491.2.S1_x_at4/1110+9521857..9525557transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12308.3.S1_x_at--394--3812Chr10:9528987..9529011 (25 bp)
CTCCGATCCTCGTGTGGGCGATGAA
NONE
Os.12308.3.S1_x_at--848--8432Chr10:9529076..9529100 (25 bp)
GGCCATCCATCGATCCATTATTATA
NONE
Os.12308.3.S1_x_at--990--10192Chr10:9529094..9529118 (25 bp)
TATTATATGGCCTGGGCGCGCGCAA
NONE
Os.12308.3.S1_x_at--806--6271Chr10:9529146..9529170 (25 bp)
GATGTATTCCGAAGCGGTCTCCAAT
NONE
Os.12308.3.S1_x_at--857--3091Chr10:9529168..9529192 (25 bp)
AATTACGCGGCTCTGATTCGGAGTT
NONE
Os.12308.3.S1_x_at--215--9451Chr10:9529185..9529209 (25 bp)
TCGGAGTTTCGGACTCGGATCTGTT
NONE
Os.12308.3.S1_x_at--97--451Chr10:9529286..9529310 (25 bp)
ATCTACCGGTTTTCTCCCATTATAT
NONE
Os.12308.3.S1_x_at--9--10231Chr10:9529308..9529332 (25 bp)
TATTCCATCCATTTTTCTGGTCTCT
NONE
Os.12308.3.S1_x_at--449--4431NONE
GCCATGACTTTTCTGTGCCAGTCAA
NONE
Os.12308.3.S1_x_at--741--7892Chr10:9529504..9529528 (25 bp)
GGATTTACCTTATGTCTTCTCGTAG
NONE
Os.12308.3.S1_x_at--154--10311Chr10:9529520..9529544 (25 bp)
TTCTCGTAGTTAGTACTTCCTCCGT
NONE
Target Sequence 
CTCCGATCCTCGTGTGGGCGATGAATGTATTGGGCGATAGCTGATCAGCGAGCGACTGAGATGGAGAAGGAGTTGGTTGG
GAGTCGAGCGGCCATCCATCGATCCATTATTATATGGCCTGGGCGCGCGCAAGCGGATTGGAGTCGGAGAGGGAGTAGCG
ATGTATTCCGAAGCGGTCTCCAATTACGCGGCTCTGATTCGGAGTTTCGGACTCGGATCTGTTCTTCTAGTTTTCTGTTT
CCCTCTCTCCTGTTCGACTCGACTCGGACTCGGCCGCCGCCTGCACTGCATCAGCCCCGATCTACCGGTTTTCTCCCATT
ATATTCCATCCATTTTTCTGGTCTCTCTCCATCCGCCATGACTTTTCTGTGCCAGTCAAGATTTACTTGGATTTACCTTA
TGTCTTCTCGTAGTTAGTACTTCCTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12308.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis