Browse Element(s) Details


OsAffx.8264.1.S1_at

Description gb:NM_195844.1
DB_XREF= gi:37533047
TID=OsAffx.8264.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposase (OSJNBa0015I18.1), mRNA.
PROD=putative transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1931011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g188403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g144201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g304001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g106801/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19270Os.52238.1.S1_at4/1110+9482486..9485306retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g19280NANA10+9490426..9492119retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19290NANA10+9493260..9494777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19300OsAffx.20499.2.S1_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.8265.1.A1_x_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.8265.1.A1_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.20499.1.S1_at10/1110+9496961..9500354expressed protein
LOC_Os10g19300Os.12308.3.S1_x_at3/1110+9496961..9500354expressed protein
LOC_Os10g19300Os.31640.1.S1_at1/1110+9496961..9500354expressed protein
LOC_Os10g19310OsAffx.8264.1.S1_at11/1110+9506620..9509870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19314Os.51388.1.S1_at1/1110+9512865..9513176hypothetical protein
LOC_Os10g19318NANA10+9514123..9514413hypothetical protein
LOC_Os10g19322NANA10+9515290..9518594transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19326Os.47463.1.S1_x_at5/1110+9521857..9525557transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19326Os.14491.2.S1_x_at4/1110+9521857..9525557transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19330NANA10+9528379..9528894hypothetical protein
LOC_Os10g19334Os.12308.1.S1_at11/1110+9529766..9536654large secreted protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8264.1.S1_at--818--951Chr10:9507178..9507202 (25 bp)
AGGACTCCAACAGCCTGGTATTGAT
LOC_Os10g19310
OsAffx.8264.1.S1_at--867--131Chr10:9507033..9507057 (25 bp)
ATTAATAATTACCACGCCATGTTTT
LOC_Os10g19310
OsAffx.8264.1.S1_at--1159--1191Chr10:9507007..9507031 (25 bp)
AGTTTCAGGGCAGATCAAAGGTAAA
LOC_Os10g19310
OsAffx.8264.1.S1_at--325--7693Chr10:9506974..9506998 (25 bp)
GGTGATATGCTTGAATGGAACGTAC
LOC_Os10g19310
OsAffx.8264.1.S1_at--460--5452Chr10:9506957..9506981 (25 bp)
GAACGTACTATAGGTACCTCCCAGG
LOC_Os10g19310
OsAffx.8264.1.S1_at--298--10092Chr10:9506947..9506971 (25 bp)
TAGGTACCTCCCAGGTTCCAACAAG
LOC_Os10g19310
OsAffx.8264.1.S1_at--905--5951Chr10:9506841..9506865 (25 bp)
GAGAATGATTCTCCACTGAAACTTA
LOC_Os10g19310
OsAffx.8264.1.S1_at--776--10531Chr10:9506833..9506857 (25 bp)
TTCTCCACTGAAACTTACACCCGGG
LOC_Os10g19310
OsAffx.8264.1.S1_at--113--5371Chr10:9506701..9506725 (25 bp)
GAAGAAACCAGATGGCAACCTCCCT
LOC_Os10g19310
OsAffx.8264.1.S1_at--792--3773Chr10:9506678..9506702 (25 bp)
CTCCCCTATTCAAGAAGCATTCCAT
LOC_Os10g19310
OsAffx.8264.1.S1_at--426--9231Chr10:9506658..9506682 (25 bp)
TCCATATTCCTTAAGTACCTGTCGT
LOC_Os10g19310
Target Sequence 
AGGACTCCAACAGCCTGGTATTGATATTGACATATTTCTCGAACCATTGTTGGAAGATATGGCAGATTTATGGCATGAAG
GGTTGAAAGTGTGGGATGAGTACTTAAGACAACACTTCACAGTGAAGGCCATCATTTTCATTACCATTAATAATTACCAC
GCCATGTTTTCAGTTTCAGGGCAGATCAAAGGTAAAACAGGATGGGTGATATGCTTGAATGGAACGTACTATAGGTACCT
CCCAGGTTCCAACAAGCTTGTTTACTTGAGGCACCGGCAGTTCCTATCCAAGGGTCATAAGTTTCGCAAGATGAAAGCAG
AGTTCGATGGTACTGAAGAGAATGATTCTCCACTGAAACTTACACCCGGGGATAAAGTATGTGAGGCGATAGAGAAAATA
GAATGTGTGTTTGGAAAAGGGACTAAGAAAAAATTAAAGGGGACAAAGCGTAAGAAAACATCAAAGGGGACAAAGCGGAA
GAAACCAGATGGCAACCTCCCTCCCCTATTCAAGAAGCATTCCATATTCCTTAAGTACCTGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis