Browse Element(s) Details


Os.51388.1.S1_at

Description gb:AK062686.1
DB_XREF= gi:32972704
TID=Os.51388.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-H10, full insert sequence.
FL= gb:AK062686.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g193141/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19280NANA10+9490426..9492119retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19290NANA10+9493260..9494777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19300OsAffx.20499.2.S1_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.8265.1.A1_x_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.8265.1.A1_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.20499.1.S1_at10/1110+9496961..9500354expressed protein
LOC_Os10g19300Os.12308.3.S1_x_at3/1110+9496961..9500354expressed protein
LOC_Os10g19300Os.31640.1.S1_at1/1110+9496961..9500354expressed protein
LOC_Os10g19310OsAffx.8264.1.S1_at11/1110+9506620..9509870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19314Os.51388.1.S1_at1/1110+9512865..9513176hypothetical protein
LOC_Os10g19318NANA10+9514123..9514413hypothetical protein
LOC_Os10g19322NANA10+9515290..9518594transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19326Os.47463.1.S1_x_at5/1110+9521857..9525557transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19326Os.14491.2.S1_x_at4/1110+9521857..9525557transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19330NANA10+9528379..9528894hypothetical protein
LOC_Os10g19334Os.12308.1.S1_at11/1110+9529766..9536654large secreted protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51388.1.S1_at--85--5491Chr10:9512912..9512936 (25 bp)
GAACATCGACCTCTAGGGTGGAGAA
LOC_Os10g19314
Os.51388.1.S1_at--849--3191Chr10:9512855..9512879 (25 bp)
CAATGGTGGCCCTGAAACGGTGTTC
NONE
Os.51388.1.S1_at--986--9071Chr10:9512808..9512832 (25 bp)
TGCTTTCAACCTTGTGCAGCACTAA
NONE
Os.51388.1.S1_at--299--8691Chr10:9512796..9512820 (25 bp)
TGTGCAGCACTAACGGACTTCAACC
NONE
Os.51388.1.S1_at--1079--6211Chr10:9512729..9512753 (25 bp)
GAGGCCCATGTAGACGCTGGTTGCT
NONE
Os.51388.1.S1_at--7--10731Chr10:9512709..9512733 (25 bp)
TTGCTGCGTCGGATCTGGACAGATT
NONE
Os.51388.1.S1_at--134--891Chr10:9512639..9512663 (25 bp)
AGGCCATCCATCTCTGCTGTGTTTA
NONE
Os.51388.1.S1_at--1161--9471Chr10:9512627..9512651 (25 bp)
TCTGCTGTGTTTATCCTTCCATGGA
NONE
Os.51388.1.S1_at--142--10371Chr10:9512580..9512604 (25 bp)
TTTTTCTCTCTTCGCTGGTTCTGTA
NONE
Os.51388.1.S1_at--904--7891Chr10:9512564..9512588 (25 bp)
GGTTCTGTAGTTTTTCACGCAGAGA
NONE
Os.51388.1.S1_at--1155--5271Chr10:9512512..9512536 (25 bp)
GAATGTAATACTGAGCGGCGGCAAT
NONE
Target Sequence 
GAACATCGACCTCTAGGGTGGAGAAGGACGGATCTGGAGGACGCACACCCTCATCCGCAATGGTGGCCCTGAAACGGTGT
TCAAGCCGGAAAGAAGCGGAAGGCTGCTTTCAACCTTGTGCAGCACTAACGGACTTCAACCCCGGCGATCAGCTTCCAGG
CCGGCATCGATGCGTATAGGGAGGAGGCCCATGTAGACGCTGGTTGCTGCGTCGGATCTGGACAGATTCTGGAGGGAGGC
CGGCGCATGCTGCAGCACCACGGCGTGCTTCTCAGGCCATCCATCTCTGCTGTGTTTATCCTTCCATGGATGGGAGATGC
GTTTCTTTTTTTTTTTCTCTCTTCGCTGGTTCTGTAGTTTTTCACGCAGAGATTTTGTACGATTTATATGCGCATGGTTG
AATGTAATACTGAGCGGCGGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis