Browse Element(s) Details


Os.10197.1.S1_at

Description gb:AK071806.1
DB_XREF= gi:32981829
TID=Os.10197.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023111J10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023111J10, full insert sequence.
FL= gb:AK071806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2406011/11xanthine/uracil/vitamin C permease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24050Os.51314.1.S1_at11/1111+13132079..13137123expressed protein
LOC_Os11g24050Os.17435.1.S1_s_at11/1111+13132079..13137123expressed protein
LOC_Os11g24050Os.17435.1.S1_x_at11/1111+13132079..13137123expressed protein
LOC_Os11g24050Os.17435.2.S1_at11/1111+13132079..13137123expressed protein
LOC_Os11g24050OsAffx.8265.1.A1_x_at1/1111+13132079..13137123expressed protein
LOC_Os11g24060Os.10197.1.S1_at11/1111+13161298..13163220xanthine/uracil/vitamin C permease family protein, putative, expressed
LOC_Os11g24070Os.37890.1.S1_s_at11/1111+13168268..13169248Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g24070Os.37890.1.S1_at10/1111+13168268..13169248Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g24080OsAffx.18979.1.S1_at11/1111+13177193..13178004hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015646molecular_functionpermease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10197.1.S1_at--608--4551Chr11:13162698..13162722 (25 bp)
GCGCCATGATGATGCGCGTGGCCAA
LOC_Os11g24060
Os.10197.1.S1_at--967--4931Chr11:13162821..13162845 (25 bp)
GCTTGGGAGTATACATCGCGCTGCA
LOC_Os11g24060
Os.10197.1.S1_at--405--9031Chr11:13162842..13162866 (25 bp)
TGCACTGCTACGACTGGGCAAGGAT
LOC_Os11g24060
Os.10197.1.S1_at--473--7611Chr11:13162857..13162881 (25 bp)
GGGCAAGGATCGCTTACCTCAAGGC
LOC_Os11g24060
Os.10197.1.S1_at--164--6151Chr11:13162982..13163006 (25 bp)
GAGGTGTGACACGTTGACGACGCTT
LOC_Os11g24060
Os.10197.1.S1_at--78--1871Chr11:13162998..13163022 (25 bp)
ACGACGCTTGGGTTGTTAGCTGTTG
LOC_Os11g24060
Os.10197.1.S1_at--622--3871Chr11:13163017..13163041 (25 bp)
CTGTTGGTCAGCTGCACGTAGTAGA
LOC_Os11g24060
Os.10197.1.S1_at--988--1151Chr11:13163058..13163082 (25 bp)
AGTCTCTGTACTTGCGTTGTTGCCA
LOC_Os11g24060
Os.10197.1.S1_at--95--6651Chr11:13163073..13163097 (25 bp)
GTTGTTGCCAGATCCCTGATGAATT
LOC_Os11g24060
Os.10197.1.S1_at--276--8332Chr11:13163141..13163165 (25 bp)
GGCTCTGGCCGATTCTTGATATGTA
LOC_Os11g24060
Os.10197.1.S1_at--572--6031Chr11:13163171..13163195 (25 bp)
GAGATGTCTGTACTTTGACCATCAT
LOC_Os11g24060
Target Sequence 
GCGCCATGATGATGCGCGTGGCCAAGGACATCGAGTGGGCGGACATGAAGGAGNCCATCCCNGGCGTTCGTCACCATGGT
GCTCATGCCGCTCACCTTCTCCATCGCCAACGGCATCNATCGCCGGCTTGGGAGTATACATCGCGCTGCACTGCTACGAC
TGGGCAAGGATCGCTTACCTCAAGGCGAGTAAGGTGCTCGACGAGCGCCGGAACCAGGTCGCTGCTTCCTCGGCCGGCGA
GGCCAGCGGCATCACGGCGACGACCGCGACGGCGGCGGCGGCGGACGAGGTGTGACACGTTGACGACGCTTGGGTTGTTA
GCTGTTGGTCAGCTGCACGTAGTAGACTACTAGTCAGTTGTTAGTCTCTGTACTTGCGTTGTTGCCAGATCCCTGATGAA
TTTGGACAGGGCATAATTCTGTGCTTGGAAAAAGAAATGGGAACGGGCTCTGGCCGATTCTTGATATGTAGTAATGAGAT
GTCTGTACTTTGACCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis