Browse Element(s) Details


OsAffx.17102.1.S1_at

Description tigr:9636.m02139
TID=OsAffx.17102.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2190011/11hypothetical protein
LOC_Os08g414601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21869OsAffx.5894.1.S1_at10/118+13057395..13059449hypothetical protein
LOC_Os08g21869Os.31535.1.A1_at1/118+13057395..13059449hypothetical protein
LOC_Os08g21880OsAffx.5895.1.S1_at11/118+13061539..13067290retrotransposon, putative, centromere-specific
LOC_Os08g21890OsAffx.25476.2.S1_at1/118+13070225..13072917hypothetical protein
LOC_Os08g21890OsAffx.8356.1.S1_x_at1/118+13070225..13072917hypothetical protein
LOC_Os08g21890Os.50889.1.S1_at1/118+13070225..13072917hypothetical protein
LOC_Os08g21890OsAffx.15695.1.S1_x_at1/118+13070225..13072917hypothetical protein
LOC_Os08g21890OsAffx.20020.1.S1_x_at1/118+13070225..13072917hypothetical protein
LOC_Os08g21900OsAffx.17102.1.S1_at11/118+13079078..13080109hypothetical protein
LOC_Os08g21920OsAffx.20020.1.S1_x_at1/118+13087574..13096254retrotransposon protein, putative, unclassified
LOC_Os08g21930Os.52238.1.S1_at2/118+13104579..13109592retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21930OsAffx.13710.1.S1_at1/118+13104579..13109592retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21930OsAffx.15708.1.S1_at1/118+13104579..13109592retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17102.1.S1_at--225--9731Chr08:13080022..13080046 (25 bp)
TCAAGGTGCCGGTACCGCATCACAA
LOC_Os08g21900
OsAffx.17102.1.S1_at--785--1311Chr08:13079805..13079829 (25 bp)
AGATGGCGCAGGAGTTTCTCTCCAG
LOC_Os08g21900
OsAffx.17102.1.S1_at--595--5591Chr08:13079637..13079661 (25 bp)
GACAAGAAGGCCATAATATCGAACG
LOC_Os08g21900
OsAffx.17102.1.S1_at--1091--8431Chr08:13079629..13079653 (25 bp)
GGCCATAATATCGAACGAGGTGTTC
LOC_Os08g21900
OsAffx.17102.1.S1_at--1021--3452Chr08:26045585..26045609 (25 bp)
CAGTGAGTTTGTGATAGCGTTCGCT
LOC_Os08g41460
OsAffx.17102.1.S1_at--1056--291Chr08:13079152..13079176 (25 bp)
ATAGCGTTCGCTGGATTGGCACCGT
LOC_Os08g21900
OsAffx.17102.1.S1_at--11--4151Chr08:13079144..13079168 (25 bp)
CGCTGGATTGGCACCGTCATATTAT
LOC_Os08g21900
OsAffx.17102.1.S1_at--1071--10851Chr08:13079137..13079161 (25 bp)
TTGGCACCGTCATATTATGTCCACC
LOC_Os08g21900
OsAffx.17102.1.S1_at--830--7131Chr08:13079129..13079153 (25 bp)
GTCATATTATGTCCACCCAATGCAA
LOC_Os08g21900
OsAffx.17102.1.S1_at--471--151Chr08:13079124..13079148 (25 bp)
ATTATGTCCACCCAATGCAAGTTAC
LOC_Os08g21900
OsAffx.17102.1.S1_at--967--5171Chr08:13079108..13079132 (25 bp)
GCAAGTTACATTGGAAGCTCAATTC
LOC_Os08g21900
Target Sequence 
TCAAGGTGCCGGTACCGCATCACAACGTCATCTTCGGCGCGCGGTTGGTCCAACTGTCAGGGCTGGAGACTCCGTCACCG
GGTTTGGGCCGCCCATGCTGCTGATCAGCAAGGAGGGGTGCAACAGCAACAACAACAGGAAAGTGAAGACGATGTAGTCG
ACAGCAACGTGCTCCCCTATTGTAGCATCAACCGGAAGGAGAAGAAGACCATTGGGGAGATGGCGCAGGAGTTTCTCTCC
AGGCGCTGCAGGCCCGCCTTTTATTACGACAAGAAGGCCATAATATCGAACGAGGTGTTCGATAACCTCAAGGAGGAGCT
TATGTGGGAAGGAAGCAGCGTTGTGATGCTAAACGACAGTGAGTTTGTGATAGCGTTCGCTGGATTGGCACCGTCATATT
ATGTCCACCCAATGCAAGTTACATTGGAAGCTCAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis