Browse Element(s) Details


OsAffx.25476.2.S1_at

Description tigr:9631.m04025
TID=OsAffx.25476.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4186010/11hypothetical protein
LOC_Os08g218901/11hypothetical protein
LOC_Os04g115601/11Transposable element protein, putative, Retrotrans_gag
LOC_Os03g363701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41820OsAffx.25475.1.S1_at11/113+23176134..23176535hypothetical protein
LOC_Os03g41830OsAffx.5954.5.S1_x_at2/113+23181733..23187253retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g41830OsAffx.29791.1.S1_at1/113+23181733..23187253retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g41840OsAffx.5954.3.S1_x_at3/113+23189022..23190362Zinc knuckle family protein
LOC_Os03g41840OsAffx.5954.2.S1_at1/113+23189022..23190362Zinc knuckle family protein
LOC_Os03g41850NANA3+23193880..23195016hypothetical protein
LOC_Os03g41860OsAffx.25476.2.S1_at10/113+23198941..23201744hypothetical protein
LOC_Os03g41860OsAffx.14826.2.S1_at2/113+23198941..23201744hypothetical protein
LOC_Os03g41860OsAffx.8356.1.S1_x_at1/113+23198941..23201744hypothetical protein
LOC_Os03g41870NANA3+23203388..23204196hypothetical protein
LOC_Os03g41879NANA3+23210136..23210582hypothetical protein
LOC_Os03g41890OsAffx.14751.1.S1_at8/113+23216368..23217093hypothetical protein
LOC_Os03g41899NANA3+23218724..23219170hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25476.2.S1_at--311--3651Chr03:23201332..23201356 (25 bp)
CTTTGCACGTGGAGTCAGAACCCAA
LOC_Os03g41860
OsAffx.25476.2.S1_at--265--4511Chr03:23201300..23201324 (25 bp)
GCCGAATCCTTATTCCAGTTGCTGG
LOC_Os03g41860
OsAffx.25476.2.S1_at--401--9251Chr03:23201294..23201318 (25 bp)
TCCTTATTCCAGTTGCTGGAGCCAG
LOC_Os03g41860
OsAffx.25476.2.S1_at--674--10673Chr07:12979908..12979935 (25 bp)
TTCCAGTTGCTGGAGCCAGAAGAAG
NONE
OsAffx.25476.2.S1_at--82--3991Chr03:23200663..23200687 (25 bp)
CGGGAGATAGCCCAGATTACTATGG
LOC_Os03g41860
OsAffx.25476.2.S1_at--340--8051NONE
GGAGATAGCCCAGATTACTATGGAA
NONE
OsAffx.25476.2.S1_at--666--10471Chr03:23199389..23199413 (25 bp)
TTACAACCACAGATAAGTCCGGAAA
LOC_Os03g41860
OsAffx.25476.2.S1_at--373--4371Chr03:23199383..23199407 (25 bp)
CCACAGATAAGTCCGGAAACCCACG
LOC_Os03g41860
OsAffx.25476.2.S1_at--496--9131Chr03:23199372..23199396 (25 bp)
TCCGGAAACCCACGGAATACCGCTG
LOC_Os03g41860
OsAffx.25476.2.S1_at--751--27530Chr11:12216787..12216809 (23 bp)
AAGACGATCCAAGGACAACAACTAT
NONE
OsAffx.25476.2.S1_at--295--3271Chr03:23199115..23199286 (25 bp)
CAACAACTATAGGATTTCTGGGACA
LOC_Os03g41860
Target Sequence 
CTTTGCACGTGGAGTCAGAACCCAACTCAACTGCCGAATCCTTATTCCAGTTGCTGGAGCCAGAAGAAGAAGAAATTCAT
CCTTCGGAAATTCCATTCCAATTCAGGGTTGGTCTTTATGAAGATTATGGAAACACCCTAAATTATTCCAGCAAAACAAA
GGCTCATCCCAAGCATGAGCCGTTCGAGGAGAGCGATGTCCCCATGGTCAAGCTTGTGACCATAAACAAAGCACTGCCGG
GAGATAGCCCAGATTACTATGGAAAGTTTTTGTTGGTATTTCTTACAACCACAGATAAGTCCGGAAACCCACGGAATACC
GCTGTAGCACTTCACCTTCGGGTGACCCCTAAAGGATATCGAACTCAGGGAACGTGTGTAATCTACCTAAGGCTAAGACG
ATCCAAGGACAACAACTATAGGATTTCTGGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25476.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis