Browse Element(s) Details


OsAffx.29731.3.S1_at

Description tigr:9637.m00395
TID=OsAffx.29731.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0644011/11hypothetical protein
LOC_Os12g222601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g235001/11retrotransposon protein, putative, unclassified
LOC_Os04g162801/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06390OsAffx.25367.1.S1_at1/119+3009380..3014065retrotransposon, putative, centromere-specific
LOC_Os09g06390OsAffx.20244.1.S1_at1/119+3009380..3014065retrotransposon, putative, centromere-specific
LOC_Os09g06400NANA9+3015326..3017659retrotransposon protein, putative, unclassified
LOC_Os09g06410NANA9+3018985..3021423Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06420NANA9+3021967..3023367hypothetical protein
LOC_Os09g06430OsAffx.21269.1.S1_x_at2/119+3026830..3029359retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g06430OsAffx.7616.1.S1_at2/119+3026830..3029359retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g06430Os.46610.1.A1_x_at1/119+3026830..3029359retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g06430OsAffx.3496.1.S1_x_at1/119+3026830..3029359retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g06430OsAffx.26189.1.S1_at1/119+3026830..3029359retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g06440OsAffx.29731.3.S1_at11/119+3030241..3031286hypothetical protein
LOC_Os09g06450OsAffx.15648.1.S1_at1/119+3033999..3039037Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06464OsAffx.6185.1.S1_at11/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06464Os.3399.1.S1_at11/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06464Os.41248.2.A1_at6/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06464OsAffx.23696.1.S1_x_at2/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06464Os.41248.5.S1_x_at1/119+3047031..3063462CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29731.3.S1_at--346--2812Chr12:12547330..12547537 (25 bp)
AAGATCGAGACCGTTGGCCCCATAA
NONE
OsAffx.29731.3.S1_at--141--6612Chr12:12547318..12547342 (25 bp)
GTTGGCCCCATAATGACCGACGCGA
LOC_Os12g22260
OsAffx.29731.3.S1_at--471--8931Chr09:3031135..3031159 (25 bp)
TGACCGACGCGACAACGACAACAAT
LOC_Os09g06440
OsAffx.29731.3.S1_at--783--1071Chr09:3031077..3031101 (25 bp)
AGGGACAGTGACAACCGACGAGATC
LOC_Os09g06440
OsAffx.29731.3.S1_at--275--5973Chr05:13368538..13369045 (25 bp)
GAGAAGCCGAGCTCCTGATCCCCAA
LOC_Os05g23500
OsAffx.29731.3.S1_at--545--10611Chr09:3030944..3030968 (25 bp)
TTCGGATCGGCTTCAACGACAACGT
LOC_Os09g06440
OsAffx.29731.3.S1_at--104--9711Chr09:3030932..3030956 (25 bp)
TCAACGACAACGTCGCGACCACGGG
LOC_Os09g06440
OsAffx.29731.3.S1_at--70--10131Chr09:3030477..3030923 (25 bp)
TATCCCAGGCAACGGACGCGTCCGA
LOC_Os09g06440
OsAffx.29731.3.S1_at--1049--7831Chr09:3030448..3030472 (25 bp)
GGTACACCAGCCAGGAGCTGGCAAC
LOC_Os09g06440
OsAffx.29731.3.S1_at--1017--4511Chr09:3030421..3030445 (25 bp)
GCCGAATCACATCTGCTCGAAGCTA
LOC_Os09g06440
OsAffx.29731.3.S1_at--302--2131Chr09:3030302..3030326 (25 bp)
ACAGGGATGCACCAGAGTTGAGCAA
LOC_Os09g06440
Target Sequence 
AAGATCGAGACCGTTGGCCCCATAATGACCGACGCGACAACGACAACAATCGAGATCAGGAGAATAATCGCCGAAGACAG
GAGAGGGACAGTGACAACCGACGAGATCGAAACTCCCAATCTCCTCACCCGAGTCGAGATCGAGGACACGATCATCGCTC
GAGAAGCCGAGCTCCTGATCCCCAAGCGACCCCTCATCCTCGTCTTCGTCGTCCTCTTCGGATCGGCTTCAACGACAACG
TCGCGACCACGGGCCACACCCTATCCCAGGCAACGGACGCGTCCGAGATCGGTACACCAGCCAGGAGCTGGCAACGCGCC
GAATCACATCTGCTCGAAGCTATTCGAGATCATCGATTGGTGCGCTCATGCAGACGATGCTGTGAGGCGCAAGGAGGGAA
AAAGCAAGGCAAGAGATGAGAAGAAGAAGTCGACCGACAGGGATGCACCAGAGTTGAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29731.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis