Browse Element(s) Details


OsAffx.19757.1.S1_at

Description tigr:9640.m01992
TID=OsAffx.19757.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g201308/11hypothetical protein
LOC_Os08g214743/11hypothetical protein
LOC_Os11g198801/11O-methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20100OsAffx.7645.1.S1_at11/1112+11683944..11684414hypothetical protein
LOC_Os12g20110NANA12+11687039..11693043retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20120OsAffx.19756.1.S1_at11/1112+11700404..11700877hypothetical protein
LOC_Os12g20130OsAffx.19757.1.S1_at8/1112+11705903..11708097hypothetical protein
LOC_Os12g20130OsAffx.17095.2.S1_at1/1112+11705903..11708097hypothetical protein
LOC_Os12g20130OsAffx.17095.2.S1_x_at1/1112+11705903..11708097hypothetical protein
LOC_Os12g20140OsAffx.7646.1.S1_at11/1112+11711620..11716440hypothetical protein
LOC_Os12g20150Os.15116.1.S1_at11/1112+11724748..11741860chloroplast alpha-glucan water dikinase isoform 3, putative, expressed
LOC_Os12g20150Os.51568.1.S1_at1/1112+11724748..11741860chloroplast alpha-glucan water dikinase isoform 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19757.1.S1_at--708--1411Chr12:11708045..11708066 (22 bp)
AGAAATCCCGGATCTTCACTGGAGA
LOC_Os12g20130
OsAffx.19757.1.S1_at--365--551NONE
ATCCCGGATCTTCACTGGAGAAGCA
NONE
OsAffx.19757.1.S1_at--289--7971NONE
GGATCTTCACTGGAGAAGCATTCAT
NONE
OsAffx.19757.1.S1_at--818--10511Chr06:14011537..14011752 (25 bp)
TTCACTGGAGAAGCATTCATAAATG
NONE
OsAffx.19757.1.S1_at--582--7091Chr12:11706860..11706884 (25 bp)
GTCAAAAGTCTGCCGGTGATCTACA
LOC_Os12g20130
OsAffx.19757.1.S1_at--100--4491Chr12:11706849..11706873 (25 bp)
GCCGGTGATCTACAATTACACGAGA
LOC_Os12g20130
OsAffx.19757.1.S1_at--915--7751Chr12:11706846..11706870 (25 bp)
GGTGATCTACAATTACACGAGAAGG
LOC_Os12g20130
OsAffx.19757.1.S1_at--593--3332Chr07:14878533..14878554 (22 bp)
CACGAGAAGGCCCAAAAGTCCAATT
NONE
OsAffx.19757.1.S1_at--399--4354Chr08:12796221..12796245 (25 bp)
GCCCAAAAGTCCAATTTAATAATCA
LOC_Os08g21474
OsAffx.19757.1.S1_at--767--10275Chr08:12796235..12796259 (25 bp)
TTTAATAATCACAAATGGGCCTAGA
LOC_Os08g21474
OsAffx.19757.1.S1_at--987--2296Chr08:12796247..12796271 (25 bp)
AAATGGGCCTAGAATGTATGTCACT
LOC_Os08g21474
Target Sequence 
AGAAATCCCGGATCTTCACTGGAGAAGCATTCATAAATGAAGAGAACGAGGTGGAAATATATCGATCAATCAGTCAAAAG
TCTGCCGGTGATCTACAATTACACGAGAAGGCCCAAAAGTCCAATTTAATAATCACAAATGGGCCTAGAATGTATGTCAC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis