Browse Element(s) Details


OsAffx.7645.1.S1_at

Description tigr:9640.m01989
TID=OsAffx.7645.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2010011/11hypothetical protein
LOC_Os11g224701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20050Os.45173.1.S1_x_at2/1112+11656841..11660055retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20060OsAffx.8469.1.A1_x_at1/1112+11660345..11666316retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20070OsAffx.7644.1.S1_at11/1112+11670435..11671562hypothetical protein
LOC_Os12g20080NANA12+11671794..11672486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20090NANA12+11676363..11676878hypothetical protein
LOC_Os12g20100OsAffx.7645.1.S1_at11/1112+11683944..11684414hypothetical protein
LOC_Os12g20110NANA12+11687039..11693043retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20120OsAffx.19756.1.S1_at11/1112+11700404..11700877hypothetical protein
LOC_Os12g20130OsAffx.19757.1.S1_at8/1112+11705903..11708097hypothetical protein
LOC_Os12g20130OsAffx.17095.2.S1_at1/1112+11705903..11708097hypothetical protein
LOC_Os12g20130OsAffx.17095.2.S1_x_at1/1112+11705903..11708097hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7645.1.S1_at--667--1711Chr12:11684349..11684373 (25 bp)
ACCAGTGCAGAAGTATGGAGATTGT
LOC_Os12g20100
OsAffx.7645.1.S1_at--286--5813Chr02:14655704..14655724 (21 bp)
GACCCAATTCCTGCAACATGATGCT
NONE
OsAffx.7645.1.S1_at--1071--2491Chr12:11684281..11684305 (25 bp)
AACATGATGCTGGAGGTTCGTCCTG
LOC_Os12g20100
OsAffx.7645.1.S1_at--328--6691Chr12:11684266..11684290 (25 bp)
GTTCGTCCTGGCAGAGTGCTAGCGA
LOC_Os12g20100
OsAffx.7645.1.S1_at--898--7251Chr12:11684262..11684286 (25 bp)
GTCCTGGCAGAGTGCTAGCGACAGC
LOC_Os12g20100
OsAffx.7645.1.S1_at--1026--4591Chr12:11684245..11684269 (25 bp)
GCGACAGCCGGTGGTATGAGCCGCA
LOC_Os12g20100
OsAffx.7645.1.S1_at--1131--2091Chr12:11684071..11684095 (25 bp)
ACATGCTGGAAGATCATGTGGTACA
LOC_Os12g20100
OsAffx.7645.1.S1_at--956--1511Chr12:11684032..11684056 (25 bp)
AGCAGACTGTTGATGCACAGCTTGC
LOC_Os12g20100
OsAffx.7645.1.S1_at--728--5111Chr12:11684018..11684042 (25 bp)
GCACAGCTTGCAAACTTTAACACTA
LOC_Os12g20100
OsAffx.7645.1.S1_at--640--5131Chr12:11684009..11684033 (25 bp)
GCAAACTTTAACACTATGATCCAAC
LOC_Os12g20100
OsAffx.7645.1.S1_at--1066--10451Chr12:11684002..11684026 (25 bp)
TTAACACTATGATCCAACAACAACA
LOC_Os12g20100
Target Sequence 
ACCAGTGCAGAAGTATGGAGATTGTTGGGACCCGACCGTGCATGCCCCCGGTTGGACCCAATTCCTGCAACATGATGCTG
GAGGTTCGTCCTGGCAGAGTGCTAGCGACAGCCGGTGGTATGAGCCGCAGGAGCTGCACTGGGGTTATTCGCGCTCCTTC
AGTTCAAGTGGTCTACCTCCATCCTCTTGGATGCATTGCTCAATCTCCTCTCGAGGGGATCTGGGAAAATTCATCCGGGG
GATGGATACACTTGAACTGCAGGCAGGGAACATGCAGCACATGCTGGAAGATCATGTGGTACAGTCACGGGAATGGCAGC
AGACTGTTGATGCACAGCTTGCAAACTTTAACACTATGATCCAACAACAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis