Browse Element(s) Details


Os.15116.1.S1_at

Description gb:AK072331.1
DB_XREF= gi:32982354
TID=Os.15116.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15116 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039L19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039L19, full insert sequence.
FL= gb:AK119246.1 gb:AK072331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2015011/11chloroplast alpha-glucan water dikinase isoform 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20120OsAffx.19756.1.S1_at11/1112+11700404..11700877hypothetical protein
LOC_Os12g20130OsAffx.19757.1.S1_at8/1112+11705903..11708097hypothetical protein
LOC_Os12g20130OsAffx.17095.2.S1_at1/1112+11705903..11708097hypothetical protein
LOC_Os12g20130OsAffx.17095.2.S1_x_at1/1112+11705903..11708097hypothetical protein
LOC_Os12g20140OsAffx.7646.1.S1_at11/1112+11711620..11716440hypothetical protein
LOC_Os12g20150Os.15116.1.S1_at11/1112+11724748..11741860chloroplast alpha-glucan water dikinase isoform 3, putative, expressed
LOC_Os12g20150Os.51568.1.S1_at1/1112+11724748..11741860chloroplast alpha-glucan water dikinase isoform 3, putative, expressed
LOC_Os12g20169OsAffx.7647.1.S1_at11/1112+11750024..11757293hypothetical protein
LOC_Os12g20169Os.40855.4.S1_x_at2/1112+11750024..11757293hypothetical protein
LOC_Os12g20169OsAffx.28702.1.S1_at1/1112+11750024..11757293hypothetical protein
LOC_Os12g20169Os.40360.1.S1_x_at1/1112+11750024..11757293hypothetical protein
LOC_Os12g20169Os.40855.5.S1_x_at1/1112+11750024..11757293hypothetical protein
LOC_Os12g20190OsAffx.4841.1.S1_at3/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20190OsAffx.22699.1.S1_x_at2/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20190OsAffx.31699.1.S1_at1/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20190OsAffx.11259.1.S1_at1/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20190OsAffx.22603.1.S1_at1/1112+11757941..11767653retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0005982biological_processstarch metabolism
GO:0005983biological_processstarch catabolism
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0003824molecular_functioncatalytic activity
GO:0019200molecular_functioncarbohydrate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15116.1.S1_at--393--5151Chr12:11725274..11725298 (25 bp)
GCAAGAAGCCATTGTCGGTTGATAC
LOC_Os12g20150
Os.15116.1.S1_at--1108--2711Chr12:11725129..11725153 (25 bp)
AAGCAGGCCACAGCCATAGCATGGA
LOC_Os12g20150
Os.15116.1.S1_at--645--831Chr12:11725109..11725133 (25 bp)
ATGGATGTGCGCCAATATCAGTATG
LOC_Os12g20150
Os.15116.1.S1_at--268--9171Chr12:11725067..11725091 (25 bp)
TGCCGCATGGATCGACTGTTGTAAT
LOC_Os12g20150
Os.15116.1.S1_at--414--5231Chr12:11725040..11725064 (25 bp)
GAATAGCCTTCACGCAAAACTCGAA
LOC_Os12g20150
Os.15116.1.S1_at--872--7671Chr12:11725015..11725039 (25 bp)
GGGTTGTCATTAGTGTTTCTTTACT
LOC_Os12g20150
Os.15116.1.S1_at--339--8431Chr12:11724929..11724953 (25 bp)
GGCCTAACTAATTCAAATCTTTCAT
LOC_Os12g20150
Os.15116.1.S1_at--482--3051Chr12:11724914..11724938 (25 bp)
AATCTTTCATGCCATGGCCTGAGAA
LOC_Os12g20150
Os.15116.1.S1_at--478--2031Chr12:11724841..11724865 (25 bp)
ACTAGATCTCGTACGGCTTGTTGGA
LOC_Os12g20150
Os.15116.1.S1_at--376--4631Chr12:11724765..11724789 (25 bp)
GCGATGTTTGTTACTGTACACTTCA
LOC_Os12g20150
Os.15116.1.S1_at--739--7034Chr10:17612355..17612378 (24 bp)
GTACACTTCAAACCATCTTACTGCA
NONE
Target Sequence 
GCAAGAAGCCATTGTCGGTTGATACAACCTTTAGGAAGCAGTTTGGTCAGCGACTGGCTGCGATTGGCCAGTATNTGGAG
CAGAAGTTCGGGAGTGCACAGGATGTGGAAGGTTGCCTGGTTGGGAAAGATATTTTTATAGTGCAAAGCAGGCCACAGCC
ATAGCATGGATGTGCGCCAATATCAGTATGGTTAGGTAAATAAAGTTTGCCGCATGGATCGACTGTTGTAATGCGAATAG
CCTTCACGCAAAACTCGAAGGGTTGTCATTAGTGTTTCTTTACTATTTNTTTTTGGAAGCAAGGGGAAAAAATAATGCCT
AAATTCTAAAGGAAATAGAAGTTTAAGGCCTAACTAATTCAAATCTTTCATGCCATGGCCTGAGAATNCTAATATTAGCA
CAAATCGTATGGAAATGTAACTAGTATTCAAACAACTAGATCTCGTACGGCTTGTTGGAAAATCCGTTGTAATTGATGTA
GAATTTGGCATAACATGTAATAACTACAATGCGATGTTTGTTACTGTACACTTCAAACCATCTTACTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis