Browse Element(s) Details


OsAffx.28702.1.S1_at

Description tigr:9635.m03133
TID=OsAffx.28702.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g201691/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20150Os.15116.1.S1_at11/1112+11724748..11741860chloroplast alpha-glucan water dikinase isoform 3, putative, expressed
LOC_Os12g20150Os.51568.1.S1_at1/1112+11724748..11741860chloroplast alpha-glucan water dikinase isoform 3, putative, expressed
LOC_Os12g20169OsAffx.7647.1.S1_at11/1112+11750024..11757293hypothetical protein
LOC_Os12g20169Os.40855.4.S1_x_at2/1112+11750024..11757293hypothetical protein
LOC_Os12g20169OsAffx.28702.1.S1_at1/1112+11750024..11757293hypothetical protein
LOC_Os12g20169Os.40360.1.S1_x_at1/1112+11750024..11757293hypothetical protein
LOC_Os12g20169Os.40855.5.S1_x_at1/1112+11750024..11757293hypothetical protein
LOC_Os12g20190OsAffx.4841.1.S1_at3/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20190OsAffx.22699.1.S1_x_at2/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20190OsAffx.31699.1.S1_at1/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20190OsAffx.11259.1.S1_at1/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20190OsAffx.22603.1.S1_at1/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20200Os.46995.1.S1_x_at2/1112+11777867..11779406retrotransposon protein, putative, unclassified
LOC_Os12g20200Os.46995.1.S1_at2/1112+11777867..11779406retrotransposon protein, putative, unclassified
LOC_Os12g20210NANA12+11780181..11785834retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28702.1.S1_at--44--4551NONE
GCCCTCGCCTATACGCATTGGCAAA
NONE
OsAffx.28702.1.S1_at--418--4451NONE
GCCTATACGCATTGGCAAACTCTAT
NONE
OsAffx.28702.1.S1_at--90--1871Chr07:18993906..18993930 (25 bp)
ACGACGTCTACATGGGCCTCGACAT
NONE
OsAffx.28702.1.S1_at--333--5671Chr07:18993926..18993950 (25 bp)
GACATCTCGGCACGCGTCGCGAAAT
NONE
OsAffx.28702.1.S1_at--893--5091Chr07:18993935..18993959 (25 bp)
GCACGCGTCGCGAAATTTGACGTCA
NONE
OsAffx.28702.1.S1_at--593--7231Chr07:18993941..18993965 (25 bp)
GTCGCGAAATTTGACGTCATGCTAA
NONE
OsAffx.28702.1.S1_at--728--192Chr07:18993949..18993973 (25 bp)
ATTTGACGTCATGCTAATCTACTAC
NONE
OsAffx.28702.1.S1_at--1108--5752Chr07:18993953..18993977 (25 bp)
GACGTCATGCTAATCTACTACAAGT
NONE
OsAffx.28702.1.S1_at--16--4831Chr07:18993961..18993985 (25 bp)
GCTAATCTACTACAAGTGGTTCTCC
NONE
OsAffx.28702.1.S1_at--195--6237Chr12:11754870..11754981 (25 bp)
GATGGCTACTCGATGACGACAAGCT
LOC_Os12g20169
OsAffx.28702.1.S1_at--782--3773Chr07:18994045..18994069 (25 bp)
CTCGATGACGACAAGCTACAGTTCT
NONE
Target Sequence 
GCCCTCGCCTATACGCATTGGCAAACTCTATTGCCGCTACTTTGCAAGTTTTGCTACTTCACCAACCACGACGTCTACAT
GGGCCTCGACATCTCGGCACGCGTCGCGAAATTTGACGTCATGCTAATCTACTACAAGTGGTTCTCCAATTTTCAAGAAT
TCTACTCGGACATCTTCAACATGTATCTTCACTCAAGTGATGGCTACTCGATGACGACAAGCTACAGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis