Browse Element(s) Details


Os.51568.1.S1_at

Description gb:AK063087.1
DB_XREF= gi:32973105
TID=Os.51568.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-A09, full insert sequence.
FL= gb:AK063087.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4382010/11hypothetical protein
LOC_Os12g201501/11chloroplast alpha-glucan water dikinase isoform 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43780Os.27691.2.S1_x_at2/114+25701382..25702302retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43790NANA4+25704870..25706367hypothetical protein
LOC_Os04g43800Os.52536.1.S1_at11/114+25707996..25710635Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43810OsAffx.26617.4.S1_x_at8/114+25719081..25722589hypothetical protein
LOC_Os04g43820Os.51568.1.S1_at10/114+25724344..25728356hypothetical protein
LOC_Os04g43820OsAffx.4078.1.S1_at10/114+25724344..25728356hypothetical protein
LOC_Os04g43829NANA4+25730563..25730910NA
LOC_Os04g43840Os.52793.1.S1_at11/114+25740318..25744423expressed protein
LOC_Os04g43850Os.14919.1.S1_at5/114+25746517..25750579transposon protein, putative, Mutator sub-class
LOC_Os04g43850Os.56216.1.S1_at1/114+25746517..25750579transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0005982biological_processstarch metabolism
GO:0005983biological_processstarch catabolism
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0003824molecular_functioncatalytic activity
GO:0019200molecular_functioncarbohydrate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51568.1.S1_at--315--7591Chr04:25724719..25724743 (25 bp)
GGGCTATTCATTGTTCAGCATCCAT
LOC_Os04g43820
Os.51568.1.S1_at--1103--3391Chr04:25724704..25724728 (25 bp)
CAGCATCCATGTTTGAGCTCGTGAT
LOC_Os04g43820
Os.51568.1.S1_at--839--8771Chr04:25724695..25724719 (25 bp)
TGTTTGAGCTCGTGATATCGATCCC
LOC_Os04g43820
Os.51568.1.S1_at--351--7051Chr04:25724524..25724548 (25 bp)
GTAACAGGGTGCGTCGTGTTGTTTT
LOC_Os04g43820
Os.51568.1.S1_at--438--10391Chr04:25724503..25724527 (25 bp)
TTTTGGTTTGTTTCACACTGTTGAA
LOC_Os04g43820
Os.51568.1.S1_at--356--10571Chr04:25724469..25724493 (25 bp)
TTCTCCTTTGTTTGTACTACTTTAG
LOC_Os04g43820
Os.51568.1.S1_at--318--10372Chr12:11737911..11738066 (25 bp)
TTTTTTCCCCATGATTGTCAGTGGT
LOC_Os12g20150
Os.51568.1.S1_at--281--6651Chr04:25724394..25724418 (25 bp)
GTTGAACTACTCGTTGTTTTGCCAT
LOC_Os04g43820
Os.51568.1.S1_at--112--6811Chr04:25724379..25724403 (25 bp)
GTTTTGCCATAATCTTTCTGTTGAA
LOC_Os04g43820
Os.51568.1.S1_at--943--10411Chr04:25724364..25724388 (25 bp)
TTCTGTTGAATCTTCCCCTATTTTT
LOC_Os04g43820
Os.51568.1.S1_at--1082--5271Chr04:25724325..25724349 (25 bp)
GAATGATGTCTTAGTGCAAACCGAA
NONE
Target Sequence 
GGGCTATTCATTGTTCAGCATCCATGTTTGAGCTCGTGATATCGATCCCGGCGATCCTCCTGGTTCTCGTCATCGCGCTG
GGGTGCTACCTGCTCGGCCGGAACCGTGGCCGCGCGGAGGCCGCATCGCCGCAGCAGTTTGCACCGCCCGCGCCGCCGCA
GCAGTTCGCACCGCCCACCCCGCCCAAGTAGGCAAGTAACAGGGTGCGTCGTGTTGTTTTGGTTTGTTTCACACTGTTGA
AACTTCCAATTTCTCCTTTGTTTGTACTACTTTAGTAGGAGGATTGTTCCTTTTTTTTTCCCCATGATTGTCAGTGGTGA
ATTGTGTTGAACTACTCGTTGTTTTGCCATAATCTTTCTGTTGAATCTTCCCCTATTTTTTTCCTTTTACAGATGAATGA
TGTCTTAGTGCAAACCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis