Browse Element(s) Details


OsAffx.4078.1.S1_at

Description tigr:9632.m04202
TID=OsAffx.4078.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4382010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43780Os.27691.2.S1_x_at2/114+25701382..25702302retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43790NANA4+25704870..25706367hypothetical protein
LOC_Os04g43800Os.52536.1.S1_at11/114+25707996..25710635Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43810OsAffx.26617.4.S1_x_at8/114+25719081..25722589hypothetical protein
LOC_Os04g43820Os.51568.1.S1_at10/114+25724344..25728356hypothetical protein
LOC_Os04g43820OsAffx.4078.1.S1_at10/114+25724344..25728356hypothetical protein
LOC_Os04g43829NANA4+25730563..25730910NA
LOC_Os04g43840Os.52793.1.S1_at11/114+25740318..25744423expressed protein
LOC_Os04g43850Os.14919.1.S1_at5/114+25746517..25750579transposon protein, putative, Mutator sub-class
LOC_Os04g43850Os.56216.1.S1_at1/114+25746517..25750579transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4078.1.S1_at--1073--1571NONE
AGCTCCTCACAACAGCGGCAATGAT
NONE
OsAffx.4078.1.S1_at--991--6331Chr04:25726235..25726259 (25 bp)
GATGCTTTGCCTTCTATGGTACATT
LOC_Os04g43820
OsAffx.4078.1.S1_at--241--811Chr04:25726220..25726244 (25 bp)
ATGGTACATTCTCCGGTATGTCCTT
LOC_Os04g43820
OsAffx.4078.1.S1_at--366--1331Chr04:25726185..25726209 (25 bp)
AGAGGTACAATCTTCTTCCCCGTGA
LOC_Os04g43820
OsAffx.4078.1.S1_at--1109--4191Chr04:25726167..25726191 (25 bp)
CCCGTGATTCATTTACCTTTCTTGT
LOC_Os04g43820
OsAffx.4078.1.S1_at--326--1751Chr04:25725795..25726177 (25 bp)
ACCTTTCTTGTTGGCTGTAACCTGA
LOC_Os04g43820
OsAffx.4078.1.S1_at--782--8331Chr04:25725783..25725803 (21 bp)
GGCTGTAACCTGAAGACCATTTTGC
LOC_Os04g43820
OsAffx.4078.1.S1_at--304--291Chr04:25725523..25725547 (25 bp)
ATAGTATTGTCCGTGATTGCTGTCA
LOC_Os04g43820
OsAffx.4078.1.S1_at--275--6591Chr04:25725509..25725533 (25 bp)
GATTGCTGTCACATTGTTTTCCGAG
LOC_Os04g43820
OsAffx.4078.1.S1_at--453--10131Chr04:25725300..25725495 (25 bp)
TATGCCAAGCGATCTGAAGTGTACA
LOC_Os04g43820
OsAffx.4078.1.S1_at--661--2051Chr04:25724969..25725198 (25 bp)
ACTTGCCAGAAGTTCGTTCCGGAGC
LOC_Os04g43820
Target Sequence 
AGCTCCTCACAACAGCGGCAATGATATATTGATGCTTTGCCTTCTATGGTACATTCTCCGGTATGTCCTTGGGTTCTTTC
AGAGGTACAATCTTCTTCCCCGTGATTCATTTACCTTTCTTGTTGGCTGTAACCTGAAGACCATTTTGCAAGGTGGGAAC
TATCTTGTGCAAGGCAGGAAATTGCATTGTAAACTGAGCAACCAGAGAGGAACTGATGAGATGTTTGTTGTAATTTGGAC
CCATAGTATTGTCCGTGATTGCTGTCACATTGTTTTCCGAGAAAACCGCATTAGTATGCCAAGCGATCTGAAGTGTACAA
AACTACAAATTTCCTTGGGTGATTTCATGGTTTTTGAGGAGGTACTGGGAAGTACCATATCTACTAGTGTAAAAGTTGGA
ACAACTCAATATCAGTTGCCACTTGCCAGAAGTTCGTTCCGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis