Browse Element(s) Details


OsAffx.7646.1.S1_at

Description tigr:9640.m01993
TID=OsAffx.7646.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2014011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20110NANA12+11687039..11693043retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20120OsAffx.19756.1.S1_at11/1112+11700404..11700877hypothetical protein
LOC_Os12g20130OsAffx.19757.1.S1_at8/1112+11705903..11708097hypothetical protein
LOC_Os12g20130OsAffx.17095.2.S1_at1/1112+11705903..11708097hypothetical protein
LOC_Os12g20130OsAffx.17095.2.S1_x_at1/1112+11705903..11708097hypothetical protein
LOC_Os12g20140OsAffx.7646.1.S1_at11/1112+11711620..11716440hypothetical protein
LOC_Os12g20150Os.15116.1.S1_at11/1112+11724748..11741860chloroplast alpha-glucan water dikinase isoform 3, putative, expressed
LOC_Os12g20150Os.51568.1.S1_at1/1112+11724748..11741860chloroplast alpha-glucan water dikinase isoform 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7646.1.S1_at--47--6571Chr12:11714024..11714048 (25 bp)
GATTCAAATCTTGCAGTCGCGTGAG
LOC_Os12g20140
OsAffx.7646.1.S1_at--503--7571Chr12:11713955..11713979 (25 bp)
GGGCGACCCGATTCTAGGACAGTGT
LOC_Os12g20140
OsAffx.7646.1.S1_at--881--5652Chr12:11713938..11713962 (25 bp)
GACAGTGTGATGACAGGCTTGCCTT
LOC_Os12g20140
OsAffx.7646.1.S1_at--64--8591Chr12:11712552..11712576 (25 bp)
TGGTACTCCAACACTGATTTCAGTT
LOC_Os12g20140
OsAffx.7646.1.S1_at--988--10671Chr12:11712529..11712553 (25 bp)
TTCCTATGAGCTCCCAATTGATTTG
LOC_Os12g20140
OsAffx.7646.1.S1_at--310--4511Chr12:11712058..11712082 (25 bp)
GCCGATGTCCTTCCACAATTAGTGA
LOC_Os12g20140
OsAffx.7646.1.S1_at--54--311Chr12:11711984..11712008 (25 bp)
ATAGCTCCGACTATCATCGGTTTCA
LOC_Os12g20140
OsAffx.7646.1.S1_at--275--491Chr12:11711969..11711993 (25 bp)
ATCGGTTTCAGTGCCGCCATGGAAG
LOC_Os12g20140
OsAffx.7646.1.S1_at--153--7571Chr12:11711919..11711943 (25 bp)
GGGCGATGAACCTACCAATGTTACT
LOC_Os12g20140
OsAffx.7646.1.S1_at--892--5351Chr12:11711885..11711909 (25 bp)
GAAGATGCCAGCAATATCCCTGAGG
LOC_Os12g20140
OsAffx.7646.1.S1_at--583--2431Chr12:11711717..11711741 (25 bp)
AAAACCATATCAGCTTCTACTCATC
LOC_Os12g20140
Target Sequence 
GATTCAAATCTTGCAGTCGCGTGAGGGAGAGGATGAGGAGGCATGCAGCACCAGACAAGGGCGTCACTGGGGCGACCCGA
TTCTAGGACAGTGTGATGACAGGCTTGCCTTAAGCACTAGAATTTGGTACTCCAACACTGATTTCAGTTCCTATGAGCTC
CCAATTGATTTGAGATTGGATGAAATCAACAGTGACAACAAGTCCAGAGATATATTTATATCAGTTGTCTCACCCTGCAT
CCTTTCGACTGGCCGCCGATGTCCTTCCACAATTAGTGATAGTAATCAGCCGATAGTATATGCTCAAGCTTTATTACCAT
ATAGGGAAATAGCTCCGACTATCATCGGTTTCAGTGCCGCCATGGAAGATATCGAAAATGTTGCTGCCGATATGGGCGAT
GAACCTACCAATGTTACTAATGAAGATGAAGATGCCAGCAATATCCCTGAGGACAAAAGCAGCAAAGCCAACAAAAACCA
TATCAGCTTCTACTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis