Browse Element(s) Details


Os.53111.1.S1_at

Description gb:AK070866.1
DB_XREF= gi:32980889
TID=Os.53111.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023072D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072D10, full insert sequence.
FL= gb:AK070866.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g244001/11retrotransposon protein, putative, unclassified
LOC_Os05g125501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24360OsAffx.20409.1.S1_at11/1110+12147842..12148734hypothetical protein
LOC_Os10g24360OsAffx.23458.1.S1_x_at1/1110+12147842..12148734hypothetical protein
LOC_Os10g24370Os.46493.2.S1_x_at10/1110+12149339..12156009expressed protein
LOC_Os10g24370Os.3577.1.S1_x_at1/1110+12149339..12156009expressed protein
LOC_Os10g24380NANA10+12157106..12159806hypothetical protein
LOC_Os10g24390OsAffx.20408.1.S1_at10/1110+12166429..12167286hypothetical protein
LOC_Os10g24400OsAffx.203.1.S1_at11/1110+12173621..12180121retrotransposon protein, putative, unclassified
LOC_Os10g24400Os.53111.1.S1_at1/1110+12173621..12180121retrotransposon protein, putative, unclassified
LOC_Os10g24410NANA10+12183906..12184378hypothetical protein
LOC_Os10g24420NANA10+12189522..12196194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24430OsAffx.20947.1.S1_x_at1/1110+12198381..12201140transposon protein, putative, unclassified
LOC_Os10g24440NANA10+12203970..12206121transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53111.1.S1_at--183--6472Chr04:22595667..22595691 (25 bp)
GATAGAGCCGCCTGGATCGGGTCTA
NONE
Os.53111.1.S1_at--704--6391Chr04:22595681..22595705 (25 bp)
GATCGGGTCTAGACATTTTCCCCAT
NONE
Os.53111.1.S1_at--597--171Chr04:22595695..22595719 (25 bp)
ATTTTCCCCATTTCATCTTTATCTT
NONE
Os.53111.1.S1_at--996--10631Chr04:22595721..22595745 (25 bp)
TTCCTTTTTACCGTGAATGCTAGGG
NONE
Os.53111.1.S1_at--595--3231Chr04:22595800..22595824 (25 bp)
CAACGGTAGATTGACGACGATGGTA
NONE
Os.53111.1.S1_at--94--6293Chr10:12174076..12174096 (21 bp)
GATGTTGCTTTTGTCGATGGTATTT
LOC_Os10g24400
Os.53111.1.S1_at--863--10231Chr04:22595887..22595911 (25 bp)
TTTGGGATTGGAATGCCTGTCGATA
NONE
Os.53111.1.S1_at--487--10231Chr04:22595937..22595961 (25 bp)
TATTGTTGTGATCGATCTTCCGCTT
NONE
Os.53111.1.S1_at--141--9511Chr04:22595965..22595989 (25 bp)
TCTCTGTTTCGGCTTAACTGCTTGA
NONE
Os.53111.1.S1_at--867--2551Chr04:22595980..22596004 (25 bp)
AACTGCTTGAGCGTTCGCTGTGGAA
NONE
Os.53111.1.S1_at--867--3671Chr04:22596050..22596074 (25 bp)
CTTTACTGTGTAGATTTTGCTGGAA
NONE
Target Sequence 
GATAGAGCCGCCTGGATCGGGTCTAGACATTTTCCCCATTTCATCTTTATCTTTTTCCTTTTTACCGTGAATGCTAGGGT
ATATTTTGGACTGAGGGCAATTTGGTCATTCTTAAATTGTAACGGTGTGAAATCAACGGTAGATTGACGACGATGGTATT
TCTGGGAGAAAAATGCTTATACGATGGCATTTTTAAGATGTTGCTTTTGTCGATGGTATTTTTGGGATTGGAATGCCTGT
CGATAGCATTTCATGGATTTTCTCAATTTATATTGTTGTGATCGATCTTCCGCTTCGGTCTCTGTTTCGGCTTAACTGCT
TGAGCGTTCGCTGTGGAAATAAGCAGTGCGGGTTAATTACTTTGGTATGTGGCGAAAATGTAACTTTACTGTGTAGATTT
TGCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis