Browse Element(s) Details


OsAffx.20408.1.S1_at

Description tigr:9638.m02044
TID=OsAffx.20408.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2439010/11hypothetical protein
LOC_Os02g239701/11Transposable element protein, putative, Retrotrans_gag
LOC_Os06g259901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g050601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g114001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24340OsAffx.28610.1.S1_at9/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.1.S1_x_at8/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.2.S1_at7/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.2.S1_x_at4/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.3.S1_at3/1110+12142372..12143487hypothetical protein
LOC_Os10g24340Os.4760.1.S1_at1/1110+12142372..12143487hypothetical protein
LOC_Os10g24350OsAffx.8183.1.S1_at11/1110+12144589..12145302transposon protein, putative, unclassified
LOC_Os10g24360OsAffx.20409.1.S1_at11/1110+12147842..12148734hypothetical protein
LOC_Os10g24360OsAffx.23458.1.S1_x_at1/1110+12147842..12148734hypothetical protein
LOC_Os10g24370Os.46493.2.S1_x_at10/1110+12149339..12156009expressed protein
LOC_Os10g24370Os.3577.1.S1_x_at1/1110+12149339..12156009expressed protein
LOC_Os10g24380NANA10+12157106..12159806hypothetical protein
LOC_Os10g24390OsAffx.20408.1.S1_at10/1110+12166429..12167286hypothetical protein
LOC_Os10g24400OsAffx.203.1.S1_at11/1110+12173621..12180121retrotransposon protein, putative, unclassified
LOC_Os10g24400Os.53111.1.S1_at1/1110+12173621..12180121retrotransposon protein, putative, unclassified
LOC_Os10g24410NANA10+12183906..12184378hypothetical protein
LOC_Os10g24420NANA10+12189522..12196194retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20408.1.S1_at--385--4251Chr10:12166474..12166885 (25 bp)
CCGGCCAAGGCCGTGCTAGTCTTAG
LOC_Os10g24390
OsAffx.20408.1.S1_at--486--4491Chr03:23202249..23202269 (21 bp)
GCCGTGCTAGTCTTAGCCTTAGGTA
NONE
OsAffx.20408.1.S1_at--1109--36539Chr10:12166881..12166905 (25 bp)
CTTAGCCTTAGGTAGATTACGCATG
LOC_Os10g24390
OsAffx.20408.1.S1_at--888--7852Chr10:12166891..12166915 (25 bp)
GGTAGATTACGCATGTTCCCTGAGT
LOC_Os10g24390
OsAffx.20408.1.S1_at--400--3931Chr10:12167079..12167103 (25 bp)
CGGCCGCTGCCATGAGCTGAGGAAT
LOC_Os10g24390
OsAffx.20408.1.S1_at--226--8891Chr10:12167096..12167120 (25 bp)
TGAGGAATGGGTTCCGGCCTCCAAC
LOC_Os10g24390
OsAffx.20408.1.S1_at--660--9211Chr10:12167115..12167139 (25 bp)
TCCAACGCCGGATAGGCCAGATCCA
LOC_Os10g24390
OsAffx.20408.1.S1_at--343--3971Chr10:12167123..12167147 (25 bp)
CGGATAGGCCAGATCCAGACTGGGA
LOC_Os10g24390
OsAffx.20408.1.S1_at--803--571Chr10:12167135..12167159 (25 bp)
ATCCAGACTGGGAGGCACCAGATCT
LOC_Os10g24390
OsAffx.20408.1.S1_at--685--911Chr10:12167167..12167191 (25 bp)
AGGCTGTCAGATTTGGCGTCGCCGC
LOC_Os10g24390
OsAffx.20408.1.S1_at--326--7091Chr10:12167172..12167196 (25 bp)
GTCAGATTTGGCGTCGCCGCGAGCC
LOC_Os10g24390
Target Sequence 
CCGGCCAAGGCCGTGCTAGTCTTAGCCTTAGGTAGATTACGCATGTTCCCTGAGTTCGATATCCTTTTTGGGGTCACCCA
AAGGGCTGCCACCGTCGTCGACGTGCTGGCCGGCCGCTGCCATGAGCTGAGGAATGGGTTCCGGCCTCCAACGCCGGATA
GGCCAGATCCAGACTGGGAGGCACCAGATCTGGTGAGGAGGCTGTCAGATTTGGCGTCGCCGCGAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis