Browse Element(s) Details


OsAffx.3859.1.S1_at

Description tigr:9632.m02064
TID=OsAffx.3859.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2235011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22290OsAffx.28610.3.S1_at11/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_x_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_x_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.4.S1_x_at1/114+12595263..12596685hypothetical protein
LOC_Os04g22290Os.4760.1.S1_at1/114+12595263..12596685hypothetical protein
LOC_Os04g22300Os.32374.2.S1_x_at4/114+12605742..12607406hypothetical protein
LOC_Os04g22300Os.32374.2.S1_at3/114+12605742..12607406hypothetical protein
LOC_Os04g22300Os.32374.3.S1_x_at2/114+12605742..12607406hypothetical protein
LOC_Os04g22320OsAffx.26095.1.S1_at11/114+12609101..12609746hypothetical protein
LOC_Os04g22320OsAffx.26095.1.S1_x_at11/114+12609101..12609746hypothetical protein
LOC_Os04g22330OsAffx.13920.1.S1_at11/114+12610433..12611011SCP-like extracellular protein
LOC_Os04g22340OsAffx.26096.1.S1_at11/114+12614924..12615472SCP-like extracellular protein, expressed
LOC_Os04g22350OsAffx.3859.1.S1_at11/114+12617590..12619001hypothetical protein
LOC_Os04g22360Os.26778.1.S1_at11/114+12621227..12626987expressed protein
LOC_Os04g22370NANA4+12632769..12635185hypothetical protein
LOC_Os04g22380Os.49284.1.S1_x_at4/114+12637238..12643654oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g22380Os.27645.1.S1_x_at3/114+12637238..12643654oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g22380Os.49284.1.S1_at1/114+12637238..12643654oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3859.1.S1_at--639--4331Chr04:12618930..12618954 (25 bp)
CCATGCTAGCTGCAGGCCGTCACAG
LOC_Os04g22350
OsAffx.3859.1.S1_at--549--2151Chr04:12618909..12618933 (25 bp)
ACAGCCGGCGCTTCGGTCGCTGAAC
LOC_Os04g22350
OsAffx.3859.1.S1_at--1054--7771Chr04:12618895..12618919 (25 bp)
GGTCGCTGAACCAGGACCCGCCGAA
LOC_Os04g22350
OsAffx.3859.1.S1_at--246--4411Chr04:12618844..12618868 (25 bp)
GCCACATCGCGGTTCGCACATGTCA
LOC_Os04g22350
OsAffx.3859.1.S1_at--626--10631Chr04:12618619..12618856 (25 bp)
TTCGCACATGTCACGTCAACGACGA
LOC_Os04g22350
OsAffx.3859.1.S1_at--1100--7071Chr04:12618605..12618629 (25 bp)
GTCAACGACGAGACATCCCGTAGTA
LOC_Os04g22350
OsAffx.3859.1.S1_at--801--10051Chr04:12618585..12618609 (25 bp)
TAGTACCTGCCGCAACGGTGCAACC
LOC_Os04g22350
OsAffx.3859.1.S1_at--626--8591Chr04:12618541..12618565 (25 bp)
TGGTAGCGTGCTCCGCATTGGCCTT
LOC_Os04g22350
OsAffx.3859.1.S1_at--1155--7831Chr04:12617660..12617684 (25 bp)
GGTACACTATGAGAGCCTTCGGCCG
LOC_Os04g22350
OsAffx.3859.1.S1_at--228--10111Chr04:12617653..12617677 (25 bp)
TATGAGAGCCTTCGGCCGAGCCTAC
LOC_Os04g22350
OsAffx.3859.1.S1_at--267--2751Chr04:12617621..12617645 (25 bp)
AAGAACCTGGGCAACAGACTCGAGC
LOC_Os04g22350
Target Sequence 
CCATGCTAGCTGCAGGCCGTCACAGCCGGCGCTTCGGTCGCTGAACCAGGACCCGCCGAAGCCTGCCCGTCATACTGGCC
CCCGGAGCCACATCGCGGTTCGCACATGTCACGTCAACGACGAGACATCCCGTAGTACCTGCCGCAACGGTGCAACCTCG
ATCGCCACGCCCTCCGTGGTAGCGTGCTCCGCATTGGCCTTGCCGAGCTGGAAGCGGGACGGTGCCCGCGTGGCGATGGC
TGTGGTGGCGTGTTGGAGGTACACTATGAGAGCCTTCGGCCGAGCCTACCGAAACCAAGAACCTGGGCAACAGACTCGAG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis