Browse Element(s) Details


Os.38286.1.S1_at

Description gb:AK058877.1
DB_XREF= gi:32968895
TID=Os.38286.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.38286 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-006-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-006-H12, full insert sequence.
FL= gb:AK058877.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2227010/11expressed protein
LOC_Os10g187007/11hypothetical protein
LOC_Os02g061707/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22210OsAffx.26093.1.S1_at11/114+12560644..12562194SCP-like extracellular protein
LOC_Os04g22220Os.57208.1.S1_at11/114+12563861..12564567SCP-like extracellular protein, expressed
LOC_Os04g22230OsAffx.26094.1.S1_at11/114+12566808..12567374SCP-like extracellular protein
LOC_Os04g22240OsAffx.3855.1.S1_at11/114+12573097..12578028transcription factor, putative, expressed
LOC_Os04g22250NANA4+12582271..12582507retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g22260OsAffx.13919.1.S1_at11/114+12583677..12583895hypothetical protein
LOC_Os04g22270OsAffx.20519.2.S1_at11/114+12584869..12587531expressed protein
LOC_Os04g22270Os.38286.1.S1_at10/114+12584869..12587531expressed protein
LOC_Os04g22270OsAffx.20519.1.S1_at1/114+12584869..12587531expressed protein
LOC_Os04g22280OsAffx.3857.1.S1_x_at11/114+12588574..12588801hypothetical protein
LOC_Os04g22280OsAffx.3857.1.S1_at11/114+12588574..12588801hypothetical protein
LOC_Os04g22290OsAffx.28610.3.S1_at11/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_x_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_x_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.4.S1_x_at1/114+12595263..12596685hypothetical protein
LOC_Os04g22290Os.4760.1.S1_at1/114+12595263..12596685hypothetical protein
LOC_Os04g22300Os.32374.2.S1_x_at4/114+12605742..12607406hypothetical protein
LOC_Os04g22300Os.32374.2.S1_at3/114+12605742..12607406hypothetical protein
LOC_Os04g22300Os.32374.3.S1_x_at2/114+12605742..12607406hypothetical protein
LOC_Os04g22320OsAffx.26095.1.S1_at11/114+12609101..12609746hypothetical protein
LOC_Os04g22320OsAffx.26095.1.S1_x_at11/114+12609101..12609746hypothetical protein
LOC_Os04g22330OsAffx.13920.1.S1_at11/114+12610433..12611011SCP-like extracellular protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38286.1.S1_at--162--6191NONE
GAGGACCAGACTACAGGAATGCTCT
NONE
Os.38286.1.S1_at--10--1553Chr10:9171689..9171713 (25 bp)
AGCATAGATCACACATGGGCAGAGG
LOC_Os10g18700
Os.38286.1.S1_at--857--8873Chr10:9171729..9171750 (22 bp)
TGATGGGTCTGCTAGCTGCAAGTTC
LOC_Os10g18700
Os.38286.1.S1_at--309--4853Chr10:9171739..9172107 (25 bp)
GCTAGCTGCAAGTTCATTGGGTGGA
LOC_Os10g18700
Os.38286.1.S1_at--846--1411Chr04:12587259..12587283 (25 bp)
AGAAATTTACTACCTGTGAGCTGAA
LOC_Os04g22270
Os.38286.1.S1_at--902--5472Chr10:9172219..9172242 (24 bp)
GAACTCAGGATTTACTGCCTTTTGT
LOC_Os10g18700
Os.38286.1.S1_at--1072--8251Chr04:12587356..12587380 (25 bp)
GGCATCGATCGGTATTGGCATATGT
LOC_Os04g22270
Os.38286.1.S1_at--835--10193Chr10:9172318..9172342 (25 bp)
TATTAGCGGGTGGTGTTGATTTGAT
LOC_Os10g18700
Os.38286.1.S1_at--509--10312Chr04:12587426..12587450 (25 bp)
TTTCTGCCGATGTATCATTGCGTGC
LOC_Os04g22270
Os.38286.1.S1_at--1029--3594Chr11:13624337..13624361 (25 bp)
CATTGCGTGCATTATCAGATTGTTG
NONE
Os.38286.1.S1_at--195--6273Chr10:9172403..9172427 (25 bp)
GATGTAACACCGACACTGGATCAAA
LOC_Os10g18700
Target Sequence 
GAGGACCAGACTACAGGAATGCTCTGAATTTGTGGAGTTTTCTGCACCTCAGCTGACGATCATGGGGGAGGCTNCAACNC
CAGNGAGGCAGGAGGATGTTNTCCAGGTGGCGGNTCACGCNTCGTCGANAGCATAGATCACACATGGGCAGAGGAAGCTG
TGGATAGCATGATGGGTCTGCTAGCTGCAAGTTCATTGGGTGGAGCTTTCTCTTGGGGGGTGCTTTTGCCTGCCATGGNA
AGGCCAGCAAGATGGGATGAGGCTTCAGCTGGCTAGTGNGGATGGAGATGAAATCAGAAATTTACTACCTGTGAGCTGAA
CTCAGGATTTACTGCCTTTTGTAGTTAATAATCAGCGTCGTCGGCCCTGATCTACGTTTGCTATATTAGTGCTGGCATCG
ATCGGTATTGGCATATGTATTAGCGGGTGGTGTTGATTTGATTTTGTTTATTAGNTTTGTGTTTTTCTGCCGATGTATCA
TTGCGTGCATTATCAGATTGTTGATGTAACACCGACACTGGATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis