Browse Element(s) Details


OsAffx.3855.1.S1_at

Description tigr:9632.m02052
TID=OsAffx.3855.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=YDGSRA domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2224011/11transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22190Os.31845.1.S1_x_at1/114+12545306..12548516hypothetical protein
LOC_Os04g22200Os.52731.1.S1_at2/114+12548950..12555079retrotransposon protein, putative, unclassified
LOC_Os04g22200OsAffx.22699.1.S1_x_at2/114+12548950..12555079retrotransposon protein, putative, unclassified
LOC_Os04g22200OsAffx.8279.1.S1_at1/114+12548950..12555079retrotransposon protein, putative, unclassified
LOC_Os04g22210OsAffx.26093.1.S1_at11/114+12560644..12562194SCP-like extracellular protein
LOC_Os04g22220Os.57208.1.S1_at11/114+12563861..12564567SCP-like extracellular protein, expressed
LOC_Os04g22230OsAffx.26094.1.S1_at11/114+12566808..12567374SCP-like extracellular protein
LOC_Os04g22240OsAffx.3855.1.S1_at11/114+12573097..12578028transcription factor, putative, expressed
LOC_Os04g22250NANA4+12582271..12582507retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g22260OsAffx.13919.1.S1_at11/114+12583677..12583895hypothetical protein
LOC_Os04g22270OsAffx.20519.2.S1_at11/114+12584869..12587531expressed protein
LOC_Os04g22270Os.38286.1.S1_at10/114+12584869..12587531expressed protein
LOC_Os04g22270OsAffx.20519.1.S1_at1/114+12584869..12587531expressed protein
LOC_Os04g22280OsAffx.3857.1.S1_x_at11/114+12588574..12588801hypothetical protein
LOC_Os04g22280OsAffx.3857.1.S1_at11/114+12588574..12588801hypothetical protein
LOC_Os04g22290OsAffx.28610.3.S1_at11/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_x_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_x_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.4.S1_x_at1/114+12595263..12596685hypothetical protein
LOC_Os04g22290Os.4760.1.S1_at1/114+12595263..12596685hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3855.1.S1_at--699--10091Chr04:12577456..12577480 (25 bp)
TAGGACAAGCTCTGCACCAGGTGAT
LOC_Os04g22240
OsAffx.3855.1.S1_at--1025--6351Chr04:12577484..12577508 (25 bp)
GATGCCAGGAATGTTGTGACTTCAA
LOC_Os04g22240
OsAffx.3855.1.S1_at--404--1011Chr04:12577563..12577587 (25 bp)
AGGATTGCACTTTCACTGGTGTGGA
LOC_Os04g22240
OsAffx.3855.1.S1_at--441--8611Chr04:12577579..12577603 (25 bp)
TGGTGTGGAAAGAGCCGACCCCAAT
LOC_Os04g22240
OsAffx.3855.1.S1_at--851--1651Chr04:12577591..12577615 (25 bp)
AGCCGACCCCAATGCGTTAGAAGTT
LOC_Os04g22240
OsAffx.3855.1.S1_at--959--10551Chr04:12577683..12577707 (25 bp)
TTCTTCCATGATGTGTTTCCTTGCA
LOC_Os04g22240
OsAffx.3855.1.S1_at--1062--7411Chr04:12577695..12577719 (25 bp)
GTGTTTCCTTGCATACTTGGGATGT
LOC_Os04g22240
OsAffx.3855.1.S1_at--593--7751Chr04:12577818..12577842 (25 bp)
GGTGCAACTTTCACTTCCTCAGGTT
LOC_Os04g22240
OsAffx.3855.1.S1_at--782--7891Chr04:12577839..12577863 (25 bp)
GGTTCAGACATTAAGCTGCTGCATT
LOC_Os04g22240
OsAffx.3855.1.S1_at--1120--6851Chr04:12577908..12577932 (25 bp)
GTATTCTTCCTCTTTTGTTATCCCT
LOC_Os04g22240
OsAffx.3855.1.S1_at--931--10271Chr04:12577954..12577978 (25 bp)
TTTGCTTGCCCTGTTTACTTTGCAA
LOC_Os04g22240
Target Sequence 
TAGGACAAGCTCTGCACCAGGTGATGCAGATGCCAGGAATGTTGTGACTTCAACTGAAACATTGGATGGAATAGCTGCTG
AGAATGTGGCTGATTTAGTACAAATTGAGGATTGCACTTTCACTGGTGTGGAAAGAGCCGACCCCAATGCGTTAGAAGTT
GATGGCAAGAATATGATTCCAGACTTTTCAGAAGCTGAGAAGGTTAACCCTAAACAGGATCAAGAAGTTCTTCCATGATG
TGTTTCCTTGCATACTTGGGATGTTTAAAAGTTTTTAAGAAGTAGTATTATCTTATTATCTTTGGTGACATTCAGATTGG
GATGATATCATTTAATTTGGGAATAATTGAACTCATAGTGGGGGTGCAACTTTCACTTCCTCAGGTTCAGACATTAAGCT
GCTGCATTATTGAAACTTGAAACATATGCAAATTGCTTGTGAAGTTTTTTTTGTATTCTTCCTCTTTTGTTATCCCTTTT
TCTTTGATTATATTTTTTTTTGCTTGCCCTGTTTACTTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis