Browse Element(s) Details


OsAffx.26093.1.S1_at

Description tigr:9632.m02049
TID=OsAffx.26093.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SCP-like extracellular protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2221011/11SCP-like extracellular protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22180Os.26886.6.S1_s_at9/114+12535770..12537516hypothetical protein
LOC_Os04g22180Os.26886.2.S1_s_at8/114+12535770..12537516hypothetical protein
LOC_Os04g22180OsAffx.16467.1.S1_at3/114+12535770..12537516hypothetical protein
LOC_Os04g22180OsAffx.3425.1.S1_at1/114+12535770..12537516hypothetical protein
LOC_Os04g22190Os.31845.1.S1_x_at1/114+12545306..12548516hypothetical protein
LOC_Os04g22200Os.52731.1.S1_at2/114+12548950..12555079retrotransposon protein, putative, unclassified
LOC_Os04g22200OsAffx.22699.1.S1_x_at2/114+12548950..12555079retrotransposon protein, putative, unclassified
LOC_Os04g22200OsAffx.8279.1.S1_at1/114+12548950..12555079retrotransposon protein, putative, unclassified
LOC_Os04g22210OsAffx.26093.1.S1_at11/114+12560644..12562194SCP-like extracellular protein
LOC_Os04g22220Os.57208.1.S1_at11/114+12563861..12564567SCP-like extracellular protein, expressed
LOC_Os04g22230OsAffx.26094.1.S1_at11/114+12566808..12567374SCP-like extracellular protein
LOC_Os04g22240OsAffx.3855.1.S1_at11/114+12573097..12578028transcription factor, putative, expressed
LOC_Os04g22250NANA4+12582271..12582507retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g22260OsAffx.13919.1.S1_at11/114+12583677..12583895hypothetical protein
LOC_Os04g22270OsAffx.20519.2.S1_at11/114+12584869..12587531expressed protein
LOC_Os04g22270Os.38286.1.S1_at10/114+12584869..12587531expressed protein
LOC_Os04g22270OsAffx.20519.1.S1_at1/114+12584869..12587531expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26093.1.S1_at--677--5791Chr04:12561609..12561633 (25 bp)
GACGAAAATGTCTAACACCTACGTG
LOC_Os04g22210
OsAffx.26093.1.S1_at--1014--8691Chr04:12561617..12561641 (25 bp)
TGTCTAACACCTACGTGTCCCATGT
LOC_Os04g22210
OsAffx.26093.1.S1_at--1071--8691Chr04:12561632..12561656 (25 bp)
TGTCCCATGTCGCTGTCGTTGTAAT
LOC_Os04g22210
OsAffx.26093.1.S1_at--622--772Chr04:12561638..12561662 (25 bp)
ATGTCGCTGTCGTTGTAATCCTGGC
LOC_Os04g22210
OsAffx.26093.1.S1_at--807--10791Chr04:12561650..12561674 (25 bp)
TTGTAATCCTGGCAATGGCTTCCCA
LOC_Os04g22210
OsAffx.26093.1.S1_at--129--5191Chr04:12561661..12561685 (25 bp)
GCAATGGCTTCCCAGTGCTTCGCTG
LOC_Os04g22210
OsAffx.26093.1.S1_at--398--7971Chr04:12561761..12561785 (25 bp)
GGATCCTGGCGGTGCACAACGAGGC
LOC_Os04g22210
OsAffx.26093.1.S1_at--493--10511Chr04:12561898..12561922 (25 bp)
TTCAACTTCGGCGAGAACGCGTTCG
LOC_Os04g22210
OsAffx.26093.1.S1_at--57--2051Chr04:12561902..12561926 (25 bp)
ACTTCGGCGAGAACGCGTTCGTCGG
LOC_Os04g22210
OsAffx.26093.1.S1_at--630--9931Chr04:12561997..12562021 (25 bp)
TACGGCAGCAACACGTGCGCCGGCG
LOC_Os04g22210
OsAffx.26093.1.S1_at--798--7731Chr04:12562077..12562101 (25 bp)
GGTGTGGCGGAACACGACGCAGGTC
LOC_Os04g22210
Target Sequence 
GACGAAAATGTCTAACACCTACGTGTCCCATGTCGCTGTCGTTGTAATCCTGGCAATGGCTTCCCAGTGCTTCGCTGCCA
CCACCGGCGCCGGCAATGGCGTCTCGGGCGCGGACGCCGGACGCCGCGCGCGTGCCGCGCAGACGGTGGCGGGGATCCTG
GCGGTGCACAACGAGGCGCGGCGCGCGGTGGGCGTGGCGCCACTGGCGTGGAGCGCGGGCATCGCCCGGTACGCGAAGGG
GTACGCAGCGTCGCGGCGCGGCGACTGCGCGCCGCGGCGCTCGCCGCTGTTCAACTTCGGCGAGAACGCGTTCGTCGGGA
AGGGGCGGCGGTGGAACGCGCCGGCGCTGGCGGCGGCGTGGGTGGACGAGGGCCGGCGGCGGTACGACTACGGCAGCAAC
ACGTGCGCCGGCGCGGCGGCGGCCGCGTCGTCCGGGTCGTCGTCGCCGTGCACGCGGTACACGCAGGTGGTGTGGCGGAA
CACGACGCAGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis