Browse Element(s) Details


OsAffx.26063.1.S1_at

Description tigr:9632.m01678
TID=OsAffx.26063.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1859011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g18540OsAffx.26041.4.S1_s_at11/114+10219071..10219520hAT dimerisation domain-containing protein, putative
LOC_Os04g18550OsAffx.29824.2.S1_at11/114+10222332..10223569hypothetical protein
LOC_Os04g18559NANA4+10224901..10226302retrotransposon, putative, centromere-specific
LOC_Os04g18570NANA4+10227810..10231740retrotransposon protein, putative, unclassified
LOC_Os04g18580Os.51841.1.S1_x_at1/114+10235376..10241782transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g18580OsAffx.10222.1.S1_x_at1/114+10235376..10241782transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g18590OsAffx.26063.1.S1_at11/114+10243198..10243641hypothetical protein
LOC_Os04g18600NANA4+10249542..10255033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18610NANA4+10266685..10270083transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26063.1.S1_at--1064--4251Chr04:10243270..10243294 (25 bp)
CCGGAAAGCAGTGGCACACGGGCTC
LOC_Os04g18590
OsAffx.26063.1.S1_at--1128--2711Chr04:10243275..10243299 (25 bp)
AAGCAGTGGCACACGGGCTCGGCGT
LOC_Os04g18590
OsAffx.26063.1.S1_at--1045--3811Chr04:10243358..10243382 (25 bp)
CTGCGGAGAGTGTTTATATGGGCTT
LOC_Os04g18590
OsAffx.26063.1.S1_at--295--10191Chr04:10243372..10243396 (25 bp)
TATATGGGCTTGGAGAGGCGAGATC
LOC_Os04g18590
OsAffx.26063.1.S1_at--326--1271Chr04:10243392..10243416 (25 bp)
AGATCGTGGCCGAACGAGGCGGAAT
LOC_Os04g18590
OsAffx.26063.1.S1_at--733--871Chr04:10243408..10243432 (25 bp)
AGGCGGAATCGATGCGACAACGGCC
LOC_Os04g18590
OsAffx.26063.1.S1_at--214--3951Chr04:10243411..10243435 (25 bp)
CGGAATCGATGCGACAACGGCCGGC
LOC_Os04g18590
OsAffx.26063.1.S1_at--462--4491Chr04:10243466..10243490 (25 bp)
GCACGAAACGGTGCCAAAAATTGGG
LOC_Os04g18590
OsAffx.26063.1.S1_at--579--2551Chr04:10243526..10243550 (25 bp)
AACTGATCTCGCGAGGATTCGAACG
LOC_Os04g18590
OsAffx.26063.1.S1_at--530--8831Chr04:10243529..10243553 (25 bp)
TGATCTCGCGAGGATTCGAACGCGG
LOC_Os04g18590
OsAffx.26063.1.S1_at--782--3971Chr04:10243566..10243590 (25 bp)
CGGTGCAGGATTGGCGGCGACATGG
LOC_Os04g18590
Target Sequence 
CCGGAAAGCAGTGGCACACGGGCTCGGCGTGGGGGGAGCGGGAGCACGCGCGGGGAGCTCGAGAAAATCGGGGAAACAAG
AGAGGAGGCTGCGGAGAGTGTTTATATGGGCTTGGAGAGGCGAGATCGTGGCCGAACGAGGCGGAATCGATGCGACAACG
GCCGGCGAGGGGGTTCCGGTGACGTGGGTGAGTGGGGCACGAAACGGTGCCAAAAATTGGGGAAAAGTGGGGGAGGATGT
GGAGGAGGTGGTGGGGAACTGATCTCGCGAGGATTCGAACGCGGGGGCACACTAGACGGTGCAGGATTGGCGGCGACATG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis