Browse Element(s) Details


OsAffx.29824.1.S1_at

Description tigr:9637.m01028
TID=OsAffx.29824.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1300011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12970Os.49220.1.S1_at11/119+7469846..7482164expressed protein
LOC_Os09g12970OsAffx.17778.1.S1_at1/119+7469846..7482164expressed protein
LOC_Os09g12980NANA9+7483551..7485529retrotransposon protein, putative, LINE subclass
LOC_Os09g12990OsAffx.29823.1.S1_at11/119+7493637..7494432hypothetical protein
LOC_Os09g12990OsAffx.29823.1.S1_x_at11/119+7493637..7494432hypothetical protein
LOC_Os09g12990OsAffx.29308.1.S1_x_at1/119+7493637..7494432hypothetical protein
LOC_Os09g13000OsAffx.29824.1.S1_at11/119+7506155..7509207hypothetical protein
LOC_Os09g13000OsAffx.29824.2.S1_at2/119+7506155..7509207hypothetical protein
LOC_Os09g13010OsAffx.6260.1.S1_at11/119+7509531..7510835hypothetical protein
LOC_Os09g13010OsAffx.6260.1.S1_x_at11/119+7509531..7510835hypothetical protein
LOC_Os09g13020OsAffx.17678.1.S1_at11/119+7511402..7511710hypothetical protein
LOC_Os09g13030NANA9+7511888..7514754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13040OsAffx.17679.1.S1_at11/119+7517867..7521324hypothetical protein
LOC_Os09g13050OsAffx.29825.1.S1_at11/119+7524310..7524849hypothetical protein
LOC_Os09g13050OsAffx.29825.1.S1_x_at11/119+7524310..7524849hypothetical protein
LOC_Os09g13050OsAffx.18628.1.S1_x_at1/119+7524310..7524849hypothetical protein
LOC_Os09g13060NANA9+7527906..7530974retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13070Os.45173.1.S1_x_at2/119+7531372..7533451retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29824.1.S1_at--1133--7631Chr09:7507893..7507916 (24 bp)
GGGAGACTCAAGATCTGCAAATGCA
LOC_Os09g13000
OsAffx.29824.1.S1_at--820--2411Chr09:7507937..7507961 (25 bp)
AAAACAATGCTCTACAAGTCCAGAT
LOC_Os09g13000
OsAffx.29824.1.S1_at--791--3211Chr09:7507951..7507975 (25 bp)
CAAGTCCAGATTGAACTACAGCAGG
LOC_Os09g13000
OsAffx.29824.1.S1_at--267--9011Chr09:7508061..7508084 (24 bp)
TGCAACTATTGGTGATTTCTCTATA
LOC_Os09g13000
OsAffx.29824.1.S1_at--652--7751Chr09:7508071..7508339 (25 bp)
GGTGATTTCTCTATATACCTAGAAG
LOC_Os09g13000
OsAffx.29824.1.S1_at--133--311Chr09:7508329..7508353 (25 bp)
ATACCTAGAAGTGTGGCATTTGGCT
LOC_Os09g13000
OsAffx.29824.1.S1_at--851--7531Chr09:7508341..7508365 (25 bp)
GTGGCATTTGGCTTTTGATTCAAGT
LOC_Os09g13000
OsAffx.29824.1.S1_at--526--9551Chr09:7508455..7508479 (25 bp)
TCTTCATGGCAGTGGTAACTTGAGA
LOC_Os09g13000
OsAffx.29824.1.S1_at--898--1091Chr09:7508465..7508489 (25 bp)
AGTGGTAACTTGAGAATGTTCCCAA
LOC_Os09g13000
OsAffx.29824.1.S1_at--158--9531Chr09:7508566..7508590 (25 bp)
TCTCACTGCCCATTCTGATGATATG
LOC_Os09g13000
OsAffx.29824.1.S1_at--891--10651Chr09:7508611..7508635 (25 bp)
TTCCCCAAACTCTGCTGAAGATATC
LOC_Os09g13000
Target Sequence 
GGGAGACTCAAGATCTGCAAATGCAGATTGAACAAATTCAGATTCAAAACAATGCTCTACAAGTCCAGATTGAACTACAG
CAGGATGAGAACAATGCTTTGGAAGTTCAGATTGAACCAATCCAGCATCATCAGCAAGCAGATGTTCATGAAGAGATGCA
ACATGACTCTGCAACTATTGGTGATTTCTCTATATACCTAGAAGTGTGGCATTTGGCTTTTGATTCAAGTAAAGATCAGG
TGGTTTTTGTAAGGCCTGCAAAGTGTCGACGGGTTGATGCTAAGCAGACAGAGGTGGTCAAAAGGCCCAGGGCCAAACTT
CTTCATGGCAGTGGTAACTTGAGAATGTTCCCAAGCTCCTCTGCCCAGGGAGAGAAGTCTGACTTGAACCAAGAATCACC
CAAGAAGAGGTCTGGAGTTCAACCTGAGCCTCTCACTGCCCATTCTGATGATATGAAGAATTCCATTCAGCCTGCTTCCC
CAAACTCTGCTGAAGATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis