Browse Element(s) Details


Os.49220.1.S1_at

Description gb:AK063465.1
DB_XREF= gi:32973483
TID=Os.49220.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49220 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-H07, full insert sequence.
FL= gb:AK063465.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1297011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12930Os.27639.1.S1_x_at9/119+7450933..7455160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g12930OsAffx.8980.1.S1_at4/119+7450933..7455160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g12940NANA9+7457405..7464079retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12950Os.53731.1.S1_at2/119+7466242..7468075retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g12970Os.49220.1.S1_at11/119+7469846..7482164expressed protein
LOC_Os09g12970OsAffx.17778.1.S1_at1/119+7469846..7482164expressed protein
LOC_Os09g12980NANA9+7483551..7485529retrotransposon protein, putative, LINE subclass
LOC_Os09g12990OsAffx.29823.1.S1_at11/119+7493637..7494432hypothetical protein
LOC_Os09g12990OsAffx.29823.1.S1_x_at11/119+7493637..7494432hypothetical protein
LOC_Os09g12990OsAffx.29308.1.S1_x_at1/119+7493637..7494432hypothetical protein
LOC_Os09g13000OsAffx.29824.1.S1_at11/119+7506155..7509207hypothetical protein
LOC_Os09g13000OsAffx.29824.2.S1_at2/119+7506155..7509207hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49220.1.S1_at--664--8131Chr09:7481824..7481848 (25 bp)
GGACAGGATGAGGTGCTAGCACTCT
LOC_Os09g12970
Os.49220.1.S1_at--61--9491Chr09:7481846..7481870 (25 bp)
TCTGCCGGCGGTGTTGATTTATTTC
LOC_Os09g12970
Os.49220.1.S1_at--233--9678Chr09:7481869..7481893 (25 bp)
TCAGCTGTGGCCCAATGCAAGCCGA
LOC_Os09g12970
Os.49220.1.S1_at--627--3018Chr09:7481882..7481906 (25 bp)
AATGCAAGCCGATTCTCTCGGAGCT
LOC_Os09g12970
Os.49220.1.S1_at--766--10572Chr09:7481894..7481918 (25 bp)
TTCTCTCGGAGCTGATCGGGAGGAC
LOC_Os09g12970
Os.49220.1.S1_at--764--5217Chr09:7481919..7481943 (25 bp)
GAATTAGTCTAGCAGGAGTTTGTTA
LOC_Os09g12970
Os.49220.1.S1_at--854--356Chr09:7481953..7481977 (25 bp)
ATAAGTCGCGAATCAGTTGATCGTG
LOC_Os09g12970
Os.49220.1.S1_at--575--9651Chr09:7481965..7481989 (25 bp)
TCAGTTGATCGTGACCGAGTCGAGC
LOC_Os09g12970
Os.49220.1.S1_at--718--4631Chr09:7482047..7482071 (25 bp)
GCGATTTTAGCCTCGGATTCCAAAT
LOC_Os09g12970
Os.49220.1.S1_at--345--4471Chr09:7482056..7482080 (25 bp)
GCCTCGGATTCCAAATTTGTTTGTT
LOC_Os09g12970
Os.49220.1.S1_at--1008--1231Chr09:7482091..7482115 (25 bp)
AGTTGTCTTAGCTCTTTATTTCAGT
LOC_Os09g12970
Target Sequence 
GGACAGGATGAGGTGCTAGCACTCTGCCGGCGGTGTTGATTTATTTCAGCTGTGGCCCAATGCAAGCCGATTCTCTCGGA
GCTGATCGGGAGGACGAATTAGTCTAGCAGGAGTTTGTTAGAGATGCAAATAAGTCGCGAATCAGTTGATCGTGACCGAG
TCGAGCGCTGGGAGTGGCGTGCGTGTGTGCGTGGAGTTCAGAAAAAGCGGATCGTGGGATGGCGCGATTTTAGCCTCGGA
TTCCAAATTTGTTTGTTGAGTATAAGTAGTTGTCTTAGCTCTTTATTTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis