Browse Element(s) Details


OsAffx.19451.2.S1_s_at

Description tigr:9640.m00099
TID=OsAffx.19451.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0457011/11hypothetical protein
LOC_Os12g0197011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04530Os.54413.1.S1_at11/115+2078667..2082871expressed protein
LOC_Os05g04540OsAffx.26729.1.S1_at10/115+2089269..2091023expressed protein
LOC_Os05g04550Os.50890.1.S1_at11/115+2091611..2095106CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os05g04560Os.54026.1.S1_at9/115+2100882..2105585expressed protein
LOC_Os05g04560Os.17844.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560Os.52782.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560OsAffx.7578.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560Os.17844.1.S1_x_at1/115+2100882..2105585expressed protein
LOC_Os05g04570OsAffx.19451.1.S1_at11/115+2107268..2110831hypothetical protein
LOC_Os05g04570OsAffx.19451.2.S1_s_at11/115+2107268..2110831hypothetical protein
LOC_Os05g04570Os.56177.1.S1_at2/115+2107268..2110831hypothetical protein
LOC_Os05g04570OsAffx.19451.3.S1_x_at1/115+2107268..2110831hypothetical protein
LOC_Os05g04584Os.9847.1.S1_at11/115+2121913..2128292Transferase family protein, expressed
LOC_Os05g04584Os.55688.1.S1_at1/115+2121913..2128292Transferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19451.2.S1_s_at--406--7832Chr12:577294..577318 (25 bp)
GGTCACAGTACTCCACGACGCGGGC
LOC_Os12g01970
OsAffx.19451.2.S1_s_at--566--9592Chr12:577292..577316 (25 bp)
TCACAGTACTCCACGACGCGGGCGA
LOC_Os12g01970
OsAffx.19451.2.S1_s_at--834--1073Chr04:13791973..13791997 (25 bp)
AGGGCGGCGCCCTTGACGACTTCGG
NONE
OsAffx.19451.2.S1_s_at--731--3812Chr12:577200..577224 (25 bp)
CTCCTCGAGCATCCTTCTAATCGTG
LOC_Os12g01970
OsAffx.19451.2.S1_s_at--517--9352Chr12:577196..577220 (25 bp)
TCGAGCATCCTTCTAATCGTGCCCG
LOC_Os12g01970
OsAffx.19451.2.S1_s_at--323--5932Chr12:577194..577218 (25 bp)
GAGCATCCTTCTAATCGTGCCCGAT
LOC_Os12g01970
OsAffx.19451.2.S1_s_at--171--1492Chr12:577193..577217 (25 bp)
AGCATCCTTCTAATCGTGCCCGATG
LOC_Os12g01970
OsAffx.19451.2.S1_s_at--1009--9754Chr11:16698837..16698861 (25 bp)
TAATCGTGCCCGATGCCGCGGTGAT
NONE
OsAffx.19451.2.S1_s_at--146--514Chr11:16698839..16698863 (25 bp)
ATCGTGCCCGATGCCGCGGTGATCA
NONE
OsAffx.19451.2.S1_s_at--890--6354Chr11:16698848..16698871 (24 bp)
GATGCCGCGGTGATCACCTTCGATG
NONE
OsAffx.19451.2.S1_s_at--261--9173Chr04:13792077..13792101 (25 bp)
TGCCGCGGTGATCACCTTCGATGAG
NONE
Target Sequence 
GGTCACAGTACTCCACGACGCGGGCGAGGGCGGCGCCCTTGACGACTTCGGGGAGGTTGACGACGACGTCGTCCTCGCCG
CCGCCGCCGCGGCCCTCCTCGAGCATCCTTCTAATCGTGCCCGATGCCGCGGTGATCACCTTCGATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19451.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis