Browse Element(s) Details


OsAffx.26729.1.S1_at

Description tigr:9633.m00382
TID=OsAffx.26729.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0454010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04510Os.10130.3.S1_a_at11/115+2067056..2070012S-adenosylmethionine synthetase 1, putative, expressed
LOC_Os05g04520Os.11747.1.S1_at11/115+2074051..2078447Protein kinase domain containing protein, expressed
LOC_Os05g04530Os.54413.1.S1_at11/115+2078667..2082871expressed protein
LOC_Os05g04540OsAffx.26729.1.S1_at10/115+2089269..2091023expressed protein
LOC_Os05g04550Os.50890.1.S1_at11/115+2091611..2095106CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os05g04560Os.54026.1.S1_at9/115+2100882..2105585expressed protein
LOC_Os05g04560Os.17844.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560Os.52782.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560OsAffx.7578.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560Os.17844.1.S1_x_at1/115+2100882..2105585expressed protein
LOC_Os05g04570OsAffx.19451.1.S1_at11/115+2107268..2110831hypothetical protein
LOC_Os05g04570OsAffx.19451.2.S1_s_at11/115+2107268..2110831hypothetical protein
LOC_Os05g04570Os.56177.1.S1_at2/115+2107268..2110831hypothetical protein
LOC_Os05g04570OsAffx.19451.3.S1_x_at1/115+2107268..2110831hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26729.1.S1_at--1008--1651Chr05:2089825..2089849 (25 bp)
AGCCGGAGGCCTTGGAAGCCAAGAA
LOC_Os05g04540
OsAffx.26729.1.S1_at--76--2751Chr05:2089908..2089932 (25 bp)
AAGAAGAAGGCACCCCCGAAGAGCA
LOC_Os05g04540
OsAffx.26729.1.S1_at--268--1411Chr05:2089946..2089970 (25 bp)
AGACAGGGACAACAAGCCGCTCAAG
LOC_Os05g04540
OsAffx.26729.1.S1_at--128--51Chr05:2090039..2090063 (25 bp)
ATTGTCAATGCCGTCACCCATGGAG
LOC_Os05g04540
OsAffx.26729.1.S1_at--571--9731Chr05:2090043..2090067 (25 bp)
TCAATGCCGTCACCCATGGAGGTGG
LOC_Os05g04540
OsAffx.26729.1.S1_at--678--10511Chr05:2090280..2090304 (25 bp)
TTCAGGAGACGGGTCGTTGATATAT
LOC_Os05g04540
OsAffx.26729.1.S1_at--333--6511Chr05:2090298..2090322 (25 bp)
GATATATGATCGTGGCTCGCTGTTC
LOC_Os05g04540
OsAffx.26729.1.S1_at--1111--491Chr05:2090306..2090330 (25 bp)
ATCGTGGCTCGCTGTTCGGGACCTT
LOC_Os05g04540
OsAffx.26729.1.S1_at--315--6711NONE
GTTCGGGACCTTGCAACGATTTGCA
NONE
OsAffx.26729.1.S1_at--497--211Chr05:2090933..2090957 (25 bp)
ATTTGCAAGTTTGAGCAGTCCCTGT
LOC_Os05g04540
OsAffx.26729.1.S1_at--438--1531Chr05:2090946..2090970 (25 bp)
AGCAGTCCCTGTGTCTGTGATGTTG
LOC_Os05g04540
Target Sequence 
AGCCGGAGGCCTTGGAAGCCAAGAAGAAGGCCGAGGCCCCCGTTGCGCCCGCGGCCGCGCCGCCACCGCCGCCGCCGCAG
CCCAAGAAGAAGGCACCCCCGAAGAGCAGCGAGGCGAGCAGAGACAGGGACAACAAGCCGCTCAAGCTCACCGCCACGCA
GCAGCCGGCGCTGGCGTTCGCCGCGGCCGCCGCTGCCGCAGCCAGCTCGATGCCATTGTCAATGCCGTCACCCATGGAGG
TGGACGAGAAGCCGGTGATAGAGGAGTTGCAAGGTTCAGGAGACGGGTCGTTGATATATGATCGTGGCTCGCTGTTCGGG
ACCTTGCAACGATTTGCAAGTTTGAGCAGTCCCTGTGTCTGTGATGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis