Browse Element(s) Details


Os.11747.1.S1_at

Description gb:AK066258.1
DB_XREF= gi:32976276
TID=Os.11747.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29082 putative protein kinase mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058B22, full insert sequence.
FL= gb:AK066258.1 gb:AK104870.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0452011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04490Os.11309.1.S1_x_at11/115+2051819..2053375Peroxidase family protein, expressed
LOC_Os05g04500Os.47625.1.A1_s_at11/115+2058621..2060771Peroxidase family protein, expressed
LOC_Os05g04510Os.10130.3.S1_a_at11/115+2067056..2070012S-adenosylmethionine synthetase 1, putative, expressed
LOC_Os05g04520Os.11747.1.S1_at11/115+2074051..2078447Protein kinase domain containing protein, expressed
LOC_Os05g04530Os.54413.1.S1_at11/115+2078667..2082871expressed protein
LOC_Os05g04540OsAffx.26729.1.S1_at10/115+2089269..2091023expressed protein
LOC_Os05g04550Os.50890.1.S1_at11/115+2091611..2095106CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os05g04560Os.54026.1.S1_at9/115+2100882..2105585expressed protein
LOC_Os05g04560Os.17844.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560Os.52782.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560OsAffx.7578.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560Os.17844.1.S1_x_at1/115+2100882..2105585expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11747.1.S1_at--173--5051Chr05:2077563..2077684 (25 bp)
GCAGAGTCTTGTGACTTGGGCCACC
LOC_Os05g04520
Os.11747.1.S1_at--762--9971Chr05:2077742..2077765 (24 bp)
TATCCTCCTAAAGCTGTCGCAAAGT
LOC_Os05g04520
Os.11747.1.S1_at--1144--8791Chr05:2078062..2078086 (25 bp)
TGTTGCGGCGTTATGCGTTCAGTAT
LOC_Os05g04520
Os.11747.1.S1_at--890--2671Chr05:2078088..2078112 (25 bp)
AAGCGGACTTTCGACCAAACATGAG
LOC_Os05g04520
Os.11747.1.S1_at--244--1551Chr05:2078111..2078135 (25 bp)
AGCATTGTCGTGAAAGCGCTGCAAC
LOC_Os05g04520
Os.11747.1.S1_at--117--5271Chr05:2078143..2078167 (25 bp)
GAATGCTCGGGCAACTAACCCTGGA
LOC_Os05g04520
Os.11747.1.S1_at--858--591Chr05:2078172..2078196 (25 bp)
ATGCCGGGTCATAAAACTTTGGTCT
LOC_Os05g04520
Os.11747.1.S1_at--917--7011Chr05:2078278..2078302 (25 bp)
GTACATTTGTGATTATTCGTCCCTT
LOC_Os05g04520
Os.11747.1.S1_at--156--111Chr05:2078292..2078316 (25 bp)
ATTCGTCCCTTGTTGTAATCACCAA
LOC_Os05g04520
Os.11747.1.S1_at--587--10251Chr05:2078337..2078361 (25 bp)
TTTGATTCTTCGCATCGGGTGAGAC
LOC_Os05g04520
Os.11747.1.S1_at--886--5311Chr05:2078373..2078397 (25 bp)
GAAGGTGACATGCATATCTATCTAC
LOC_Os05g04520
Target Sequence 
GCAGAGTCTTGTGACTTGGGCCACCCCAAGGCTTAGNGAAGACAAGGTTAGGCAATGTGTTGACTCAAGACTTGGAGGGG
ACTATCCTCCTAAAGCTGTCGCAAAGTTTGCAGCTGTTGCGGCGTTATGCGTTCAGTATGAAGCGGACTTTCGACCAAAC
ATGAGCATTGTCGTGAAAGCGCTGCAACCCCTGCTGAATGCTCGGGCAACTAACCCTGGAGAAAATGCCGGGTCATAAAA
CTTTGGTCTACCTTTTGTATGATAGATATTAAGTTAAGAAGTATGAGACATCGATATTGTTCTTGCGGATGTGTGGCTGG
CTGGAAGTGTGTACATTTGTGATTATTCGTCCCTTGTTGTAATCACCAAGGTTCTAGCAACCGAAAATATTTGATTCTTC
GCATCGGGTGAGACATAACTTGTCTGAAGGTGACATGCATATCTATCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis