Browse Element(s) Details


Os.47625.1.A1_s_at

Description gb:BX901098
DB_XREF= gi:40494234
DB_XREF=BX901098
CLONE=y872g11p3
TID=Os.47625.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47625 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0450011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04460OsAffx.14540.1.S1_at11/115+2031498..2035614Protein kinase domain containing protein
LOC_Os05g04470OsAffx.26728.1.S1_at11/115+2039935..2041042Peroxidase family protein
LOC_Os05g04480OsAffx.25962.1.S1_at11/115+2045582..2048916transposon protein, putative, Mutator sub-class
LOC_Os05g04490Os.11309.1.S1_x_at11/115+2051819..2053375Peroxidase family protein, expressed
LOC_Os05g04500Os.47625.1.A1_s_at11/115+2058621..2060771Peroxidase family protein, expressed
LOC_Os05g04510Os.10130.3.S1_a_at11/115+2067056..2070012S-adenosylmethionine synthetase 1, putative, expressed
LOC_Os05g04520Os.11747.1.S1_at11/115+2074051..2078447Protein kinase domain containing protein, expressed
LOC_Os05g04530Os.54413.1.S1_at11/115+2078667..2082871expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47625.1.A1_s_at--356--8591Chr05:2060410..2060434 (25 bp)
TGGTCAAGGTCAGCAAGCTCGACGT
LOC_Os05g04500
Os.47625.1.A1_s_at--154--4791Chr05:2060470..2060494 (25 bp)
GCTCCAGGATCAACTAATTAACTCA
LOC_Os05g04500
Os.47625.1.A1_s_at--938--9791Chr05:2060488..2060512 (25 bp)
TAACTCAAATTAAATTCGCGTGAAG
LOC_Os05g04500
Os.47625.1.A1_s_at--1143--4131Chr05:2060504..2060528 (25 bp)
CGCGTGAAGTTTGTGATTCTCATAT
LOC_Os05g04500
Os.47625.1.A1_s_at--166--10171Chr05:2060528..2060552 (25 bp)
TATACAAACACTACTGCCCTGTTGC
LOC_Os05g04500
Os.47625.1.A1_s_at--186--2032Chr05:2060537..2060561 (25 bp)
ACTACTGCCCTGTTGCCATGCATGC
LOC_Os05g04500
Os.47625.1.A1_s_at--119--4431Chr05:2060551..2060575 (25 bp)
GCCATGCATGCATGAGGCTCATTTG
LOC_Os05g04500
Os.47625.1.A1_s_at--941--10111Chr05:2060591..2060615 (25 bp)
TATGTTTGTGCATGATTCAATGTAC
LOC_Os05g04500
Os.47625.1.A1_s_at--648--7331Chr05:2060598..2060622 (25 bp)
GTGCATGATTCAATGTACTACTACT
LOC_Os05g04500
Os.47625.1.A1_s_at--775--10771Chr05:2060672..2060696 (25 bp)
TTGATGCTGAGTGTGCCAATTGGGC
LOC_Os05g04500
Os.47625.1.A1_s_at--162--2271Chr05:2060699..2060723 (25 bp)
AAATAAATTGTGCTTCTGACCATAT
LOC_Os05g04500
Target Sequence 
TGGTCAAGGTCAGCAAGCTCGACGTGCTCACCGGCGGCGAGGGGGAGATCAGGCTCAACTGCTCCAGGATCAACTAATTA
ACTCAAATTAAATTCGCGTGAAGTTTGTGATTCTCATATATACAAACACTACTGCCCTGTTGCCATGCATGCATGAGGCT
CATTTGATTTATTTTTCTTTATATGTTTGTGCATGATTCAATGTACTACTACTACAACAACAACTTTTGTTTATTTTTAT
TTTCAGTTTCATNTTTTACCTTTTGATGCTGAGTGTGCCAATTGGGCAAAAATAAATTGTGCTTCTGACCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47625.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis