Browse Element(s) Details


OsAffx.26728.1.S1_at

Description tigr:9633.m00374
TID=OsAffx.26728.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0447011/11Peroxidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04420NANA5+2010903..2016503retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04430OsAffx.1412.2.S1_at1/115+2017339..2021334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04430OsAffx.30532.1.S1_at1/115+2017339..2021334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04440OsAffx.4250.1.S1_at11/115+2023022..2024479Peroxidase family protein, expressed
LOC_Os05g04440OsAffx.4250.1.S1_s_at11/115+2023022..2024479Peroxidase family protein, expressed
LOC_Os05g04450Os.11555.1.S1_at11/115+2028518..2030131Peroxidase family protein, expressed
LOC_Os05g04460OsAffx.14540.1.S1_at11/115+2031498..2035614Protein kinase domain containing protein
LOC_Os05g04470OsAffx.26728.1.S1_at11/115+2039935..2041042Peroxidase family protein
LOC_Os05g04480OsAffx.25962.1.S1_at11/115+2045582..2048916transposon protein, putative, Mutator sub-class
LOC_Os05g04490Os.11309.1.S1_x_at11/115+2051819..2053375Peroxidase family protein, expressed
LOC_Os05g04500Os.47625.1.A1_s_at11/115+2058621..2060771Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26728.1.S1_at--59--5811Chr05:2040467..2040491 (25 bp)
GACGCGTCGCGCATCATGGGCGGGA
LOC_Os05g04470
OsAffx.26728.1.S1_at--142--9631Chr05:2040480..2040504 (25 bp)
TCATGGGCGGGATCAAGTTTGCCAT
LOC_Os05g04470
OsAffx.26728.1.S1_at--410--7671Chr05:2040488..2040512 (25 bp)
GGGATCAAGTTTGCCATGCCCGCCG
LOC_Os05g04470
OsAffx.26728.1.S1_at--967--7191Chr05:2040785..2040809 (25 bp)
GTCGTGCAGCTCGACTTCAAGACGC
LOC_Os05g04470
OsAffx.26728.1.S1_at--1104--1171Chr05:2040828..2040852 (25 bp)
AGTACTACCAGAACGTGCTGACGCA
LOC_Os05g04470
OsAffx.26728.1.S1_at--991--9111Chr05:2040843..2040867 (25 bp)
TGCTGACGCACGAGGTGGTGTTCAC
LOC_Os05g04470
OsAffx.26728.1.S1_at--685--8931Chr05:2040846..2040870 (25 bp)
TGACGCACGAGGTGGTGTTCACGTC
LOC_Os05g04470
OsAffx.26728.1.S1_at--41--9691Chr05:2040864..2040888 (25 bp)
TCACGTCGGACCAGTCGCTGATCGA
LOC_Os05g04470
OsAffx.26728.1.S1_at--398--3451Chr05:2040917..2040941 (25 bp)
CAGTACGCCGGCAGCCGGAAGCTGT
LOC_Os05g04470
OsAffx.26728.1.S1_at--1128--4251Chr05:2040931..2040955 (25 bp)
CCGGAAGCTGTGGTCGCAGAAGTTC
LOC_Os05g04470
OsAffx.26728.1.S1_at--427--1611Chr05:2040936..2040960 (25 bp)
AGCTGTGGTCGCAGAAGTTCGCCGC
LOC_Os05g04470
Target Sequence 
GACGCGTCGCGCATCATGGGCGGGATCAAGTTTGCCATGCCCGCCGGCCGCCTCGACGGCCGCGTCTCGAGCGCGTCCGA
GGCGCTCGCCAACCTGCCCCCCGGGTCGTTCAACCTCACCCAGCTCGTCGCCCGCTTCGCCACCAAGAACCTCACCGCCG
ACGACATGGTCACCCTCTCCGGCGCCCACTCCATCGGCCGCTCCCACTGCTCCTCCTTCTCCTCCCGCCTCTACCCGCAG
ATCGACCCCGCCATGAACGCCACGCTCGGCGTCCGCTCGCGCGCCAAGTGCGCCGCGGCGCCGGGGCGCCTCGACCGCGT
CGTGCAGCTCGACTTCAAGACGCCGCTGCAGCTGGACAACCAGTACTACCAGAACGTGCTGACGCACGAGGTGGTGTTCA
CGTCGGACCAGTCGCTGATCGACCGCCCCGACACGGCGGCGCTGGTGGCGCAGTACGCCGGCAGCCGGAAGCTGTGGTCG
CAGAAGTTCGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis