Browse Element(s) Details


OsAffx.4250.1.S1_s_at

Description tigr:9633.m00371
TID=OsAffx.4250.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0444011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04390OsAffx.4249.1.S1_at11/115+2000170..2000905hypothetical protein
LOC_Os05g04400Os.20602.2.S1_x_at11/115+2001710..2003890hypothetical protein
LOC_Os05g04410Os.11551.1.S1_at11/115+2005806..2008047Peroxidase family protein, expressed
LOC_Os05g04420NANA5+2010903..2016503retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04430OsAffx.1412.2.S1_at1/115+2017339..2021334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04430OsAffx.30532.1.S1_at1/115+2017339..2021334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04440OsAffx.4250.1.S1_at11/115+2023022..2024479Peroxidase family protein, expressed
LOC_Os05g04440OsAffx.4250.1.S1_s_at11/115+2023022..2024479Peroxidase family protein, expressed
LOC_Os05g04450Os.11555.1.S1_at11/115+2028518..2030131Peroxidase family protein, expressed
LOC_Os05g04460OsAffx.14540.1.S1_at11/115+2031498..2035614Protein kinase domain containing protein
LOC_Os05g04470OsAffx.26728.1.S1_at11/115+2039935..2041042Peroxidase family protein
LOC_Os05g04480OsAffx.25962.1.S1_at11/115+2045582..2048916transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4250.1.S1_s_at--214--2611Chr05:2024150..2024174 (25 bp)
AACGCGACGCTGTGGAACGTGGACT
LOC_Os05g04440
OsAffx.4250.1.S1_s_at--1023--7351Chr05:2024189..2024213 (25 bp)
GTGAAGCTGAGCAAGCTGCCCATGC
LOC_Os05g04440
OsAffx.4250.1.S1_s_at--238--9991Chr05:2024264..2024288 (25 bp)
TACCACCATTGACGTCGACGACGAT
LOC_Os05g04440
OsAffx.4250.1.S1_s_at--231--5791Chr05:2024280..2024304 (25 bp)
GACGACGATCCTTCCATCGATCGAT
LOC_Os05g04440
OsAffx.4250.1.S1_s_at--488--4051Chr05:2024305..2024329 (25 bp)
CGATCGAACGATCTCATGGATATAT
LOC_Os05g04440
OsAffx.4250.1.S1_s_at--572--6331Chr05:2024330..2024354 (25 bp)
GATGCAGTAGCTTTGAATTAATGTT
LOC_Os05g04440
OsAffx.4250.1.S1_s_at--384--6511Chr05:2024362..2024386 (25 bp)
GATATGATCTCTGTAACTCTATTGT
LOC_Os05g04440
OsAffx.4250.1.S1_s_at--34--9551Chr05:2024379..2024403 (25 bp)
TCTATTGTATTTTTTGTTCCTTCGC
LOC_Os05g04440
OsAffx.4250.1.S1_s_at--655--10631Chr05:2024399..2024423 (25 bp)
TTCGCCCGCGTGAGTACTAGTTCAA
LOC_Os05g04440
OsAffx.4250.1.S1_s_at--619--6071Chr05:2024410..2024434 (25 bp)
GAGTACTAGTTCAAATTCAATTCGT
LOC_Os05g04440
OsAffx.4250.1.S1_s_at--1072--112Chr05:2024424..2024448 (25 bp)
ATTCAATTCGTTGTACTGCAAACTT
LOC_Os05g04440
Target Sequence 
AACGCGACGCTGTGGAACGTGGACTTCGGCGACGCGCTGGTGAAGCTGAGCAAGCTGCCCATGCCGGCGGGGAGCAAGGG
GGAGATCAGGGCCAAGTGCAGCGCCGTCAACGGCTACCACCATTGACGTCGACGACGATCCTTCCATCGATCGATCGATC
GAACGATCTCATGGATATATGATGCAGTAGCTTTGAATTAATGTTTGACTATGATATGATCTCTGTAACTCTATTGTATT
TTTTGTTCCTTCGCCCGCGTGAGTACTAGTTCAAATTCAATTCGTTGTACTGCAAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4250.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis