Browse Element(s) Details


Os.11555.1.S1_at

Description gb:AK109054.1
DB_XREF= gi:32994263
TID=Os.11555.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11555 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-E08, full insert sequence.
FL= gb:AK109054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0445011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04400Os.20602.2.S1_x_at11/115+2001710..2003890hypothetical protein
LOC_Os05g04410Os.11551.1.S1_at11/115+2005806..2008047Peroxidase family protein, expressed
LOC_Os05g04420NANA5+2010903..2016503retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04430OsAffx.1412.2.S1_at1/115+2017339..2021334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04430OsAffx.30532.1.S1_at1/115+2017339..2021334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04440OsAffx.4250.1.S1_at11/115+2023022..2024479Peroxidase family protein, expressed
LOC_Os05g04440OsAffx.4250.1.S1_s_at11/115+2023022..2024479Peroxidase family protein, expressed
LOC_Os05g04450Os.11555.1.S1_at11/115+2028518..2030131Peroxidase family protein, expressed
LOC_Os05g04460OsAffx.14540.1.S1_at11/115+2031498..2035614Protein kinase domain containing protein
LOC_Os05g04470OsAffx.26728.1.S1_at11/115+2039935..2041042Peroxidase family protein
LOC_Os05g04480OsAffx.25962.1.S1_at11/115+2045582..2048916transposon protein, putative, Mutator sub-class
LOC_Os05g04490Os.11309.1.S1_x_at11/115+2051819..2053375Peroxidase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11555.1.S1_at--83--7391Chr05:2029683..2029707 (25 bp)
GTGAGCAACAACCAGGTGACCGACC
LOC_Os05g04450
Os.11555.1.S1_at--136--8931Chr05:2029699..2029723 (25 bp)
TGACCGACCCCAACGTGCTGAGCAA
LOC_Os05g04450
Os.11555.1.S1_at--839--2571Chr05:2029710..2029734 (25 bp)
AACGTGCTGAGCAACCAGTACTTCA
LOC_Os05g04450
Os.11555.1.S1_at--319--3951Chr05:2029768..2029792 (25 bp)
CGGACCAGACGCTGACGAGCCGCGA
LOC_Os05g04450
Os.11555.1.S1_at--830--9791Chr05:2029954..2029978 (25 bp)
TAAGCTACAAGTTCTCTTTCTCCAG
LOC_Os05g04450
Os.11555.1.S1_at--287--2831Chr05:2029962..2029986 (25 bp)
AAGTTCTCTTTCTCCAGCGATCGGC
LOC_Os05g04450
Os.11555.1.S1_at--320--3391Chr05:2029976..2030000 (25 bp)
CAGCGATCGGCTGGATCATTACCAC
LOC_Os05g04450
Os.11555.1.S1_at--529--91Chr05:2030012..2030036 (25 bp)
ATTCCTTGTTATTTTGATCTCTTAA
LOC_Os05g04450
Os.11555.1.S1_at--957--6411Chr05:2030027..2030051 (25 bp)
GATCTCTTAATTTGTACTCCGTAGT
LOC_Os05g04450
Os.11555.1.S1_at--833--211Chr05:2030036..2030060 (25 bp)
ATTTGTACTCCGTAGTTACCTGCAT
LOC_Os05g04450
Os.11555.1.S1_at--483--10471Chr05:2030051..2030075 (25 bp)
TTACCTGCATCGATTCTTGCTGTTG
LOC_Os05g04450
Target Sequence 
GTGAGCAACAACCAGGTGACCGACCCCAACGTGCTGAGCAACCAGTACTTCAAGAACGTGGCCGCCGGGGAGGTGATGTT
CACGTCGGACCAGACGCTGACGAGCCGCGACGACACCAAGNCGATGGTCNACGACAACGCCGCCAACCCGGTGNCGTGGA
TGNCGAGGTTCGCGGCGNCGATGNTGAAGATGGNCGNCGTCGAGGTGCTCACCGGGAACGCCGGCGAGGTCAGGAAGGTC
NNCTTCGCCACCAACACGGCGAGCTGATAATTAAGCTACAAGTTCTCTTTCTCCAGCGATCGGCTGGATCATTACCACAT
AATATATATATTCCTTGTTATTTTGATCTCTTAATTTGTACTCCGTAGTTACCTGCATCGATTCTTGCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis