Browse Element(s) Details


Os.11309.1.S1_x_at

Description gb:AK063587.1
DB_XREF= gi:32973605
TID=Os.11309.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11309 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-A08, full insert sequence.
FL= gb:AK063587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0449011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04450Os.11555.1.S1_at11/115+2028518..2030131Peroxidase family protein, expressed
LOC_Os05g04460OsAffx.14540.1.S1_at11/115+2031498..2035614Protein kinase domain containing protein
LOC_Os05g04470OsAffx.26728.1.S1_at11/115+2039935..2041042Peroxidase family protein
LOC_Os05g04480OsAffx.25962.1.S1_at11/115+2045582..2048916transposon protein, putative, Mutator sub-class
LOC_Os05g04490Os.11309.1.S1_x_at11/115+2051819..2053375Peroxidase family protein, expressed
LOC_Os05g04500Os.47625.1.A1_s_at11/115+2058621..2060771Peroxidase family protein, expressed
LOC_Os05g04510Os.10130.3.S1_a_at11/115+2067056..2070012S-adenosylmethionine synthetase 1, putative, expressed
LOC_Os05g04520Os.11747.1.S1_at11/115+2074051..2078447Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009624biological_processresponse to nematode
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11309.1.S1_x_at--592--7331Chr05:2052348..2052372 (25 bp)
GTGACGGGTCGATACTGATAAACTC
LOC_Os05g04490
Os.11309.1.S1_x_at--724--6471Chr05:2052358..2052380 (23 bp)
GATACTGATAAACTCGACGCCGGCG
LOC_Os05g04490
Os.11309.1.S1_x_at--318--3931Chr05:2052894..2052918 (25 bp)
CGGCGAGCTTTGACAACCAGTACTA
LOC_Os05g04490
Os.11309.1.S1_x_at--678--1051Chr05:2052938..2052962 (25 bp)
AGGGTGGTGCTCAACTCCGACCAGG
LOC_Os05g04490
Os.11309.1.S1_x_at--372--1971Chr05:2053005..2053029 (25 bp)
ACTCCGCCGTCGAGAAGGTGTTCCA
LOC_Os05g04490
Os.11309.1.S1_x_at--746--2891Chr05:2053019..2053043 (25 bp)
AAGGTGTTCCAGGTCAAGTTCGCCG
LOC_Os05g04490
Os.11309.1.S1_x_at--924--2091Chr05:2053065..2053089 (25 bp)
ACATCGACGTGCTCACGGGTGACGA
LOC_Os05g04490
Os.11309.1.S1_x_at--39--5971Chr05:2053103..2053127 (25 bp)
GAGAAGTGCTTCATGGTCAACAACC
LOC_Os05g04490
Os.11309.1.S1_x_at--124--2651Chr05:2053124..2053148 (25 bp)
AACCACTACTAGTTGTCAATCAATA
LOC_Os05g04490
Os.11309.1.S1_x_at--469--9751Chr05:2053175..2053199 (25 bp)
TAATTTCATCTGCAGCTGGTTTATA
LOC_Os05g04490
Os.11309.1.S1_x_at--438--10211Chr05:2053216..2053240 (25 bp)
TATTACACGCCCAAATTTCATCATG
LOC_Os05g04490
Target Sequence 
GTGACGGGTCGATACTGATAAACTCGACGCCGGCGAGCTTTGACAACCAGTACTACAAGAACGTGCTCAAGCACAGGGTG
GTGCTCAACTCCGACCAGGCGCTGCTCGACAGCCCGTGGACCGCCGGCGTCGTCAAGCTCCACTCCGCCGTCGAGAAGGT
GTTCCAGGTCAAGTTCGCCGCCGCCATGNTGAAGATGGGCAACATCGACGTGCTCACGGGTGACGAGGGAGAGATCAGAG
AGAAGTGCTTCATGGTCAACAACCACTACTAGTTGTCAATCAATAATTAAGCTTATATTATAGTATATATATAATTTCAT
CTGCAGCTGGTTTATACATGTAGAATTAGTAATATTACACGCCCAAATTTCATCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11309.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis