Browse Element(s) Details


OsAffx.14540.1.S1_at

Description tigr:9633.m00373
TID=OsAffx.14540.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0446011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04410Os.11551.1.S1_at11/115+2005806..2008047Peroxidase family protein, expressed
LOC_Os05g04420NANA5+2010903..2016503retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04430OsAffx.1412.2.S1_at1/115+2017339..2021334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04430OsAffx.30532.1.S1_at1/115+2017339..2021334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04440OsAffx.4250.1.S1_at11/115+2023022..2024479Peroxidase family protein, expressed
LOC_Os05g04440OsAffx.4250.1.S1_s_at11/115+2023022..2024479Peroxidase family protein, expressed
LOC_Os05g04450Os.11555.1.S1_at11/115+2028518..2030131Peroxidase family protein, expressed
LOC_Os05g04460OsAffx.14540.1.S1_at11/115+2031498..2035614Protein kinase domain containing protein
LOC_Os05g04470OsAffx.26728.1.S1_at11/115+2039935..2041042Peroxidase family protein
LOC_Os05g04480OsAffx.25962.1.S1_at11/115+2045582..2048916transposon protein, putative, Mutator sub-class
LOC_Os05g04490Os.11309.1.S1_x_at11/115+2051819..2053375Peroxidase family protein, expressed
LOC_Os05g04500Os.47625.1.A1_s_at11/115+2058621..2060771Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14540.1.S1_at--158--8551Chr05:2032053..2032077 (25 bp)
TGGAGCTTCAAGAACCATGTCACTT
LOC_Os05g04460
OsAffx.14540.1.S1_at--855--751Chr05:2032037..2032061 (25 bp)
ATGTCACTTGATCAAACTCATGTTA
LOC_Os05g04460
OsAffx.14540.1.S1_at--329--7011Chr05:2031972..2031996 (25 bp)
GTACTACTACACTGGCCAACTAACA
LOC_Os05g04460
OsAffx.14540.1.S1_at--1035--8031Chr05:2031923..2031947 (25 bp)
GGAGTTATACTTGTCGAGCTTCTAG
LOC_Os05g04460
OsAffx.14540.1.S1_at--88--2711Chr05:2031855..2031879 (25 bp)
AAGCTTGGCTCATTACTTTGTGGAA
LOC_Os05g04460
OsAffx.14540.1.S1_at--1122--1131Chr05:2031646..2031670 (25 bp)
AGTGCCAACAATTTCCAGTAACAGA
LOC_Os05g04460
OsAffx.14540.1.S1_at--549--7051Chr05:2031586..2031610 (25 bp)
GTAACTCTTCAGATGGCAGGTTCAG
LOC_Os05g04460
OsAffx.14540.1.S1_at--804--3471Chr05:2031570..2031594 (25 bp)
CAGGTTCAGCCATTCTACTGGTTTA
LOC_Os05g04460
OsAffx.14540.1.S1_at--250--9931Chr05:2031555..2031579 (25 bp)
TACTGGTTTAACTTGCGACTCTGTC
LOC_Os05g04460
OsAffx.14540.1.S1_at--778--10591Chr05:2031543..2031567 (25 bp)
TTGCGACTCTGTCTCTGGAAGTTAC
LOC_Os05g04460
OsAffx.14540.1.S1_at--1073--9451Chr05:2031530..2031554 (25 bp)
TCTGGAAGTTACAGCTTGGAGCAAC
LOC_Os05g04460
Target Sequence 
TGGAGCTTCAAGAACCATGTCACTTGATCAAACTCATGTTATGACAAATGTACAAGGCACATTTGGTTACTTAGATCCAG
AGTACTACTACACTGGCCAACTAACAGCGAAGAGTGATGTCTATAGTTTTGGAGTTATACTTGTCGAGCTTCTAGTAAGA
AAGAAGTCGATTTTTATAAATGACCAAGGTACAAAACAAAGCTTGGCTCATTACTTTGTGGAAGGGCATCAACAAGGAGT
AGTCATGGAGATCTTGGATTCGCAAGTTATGGAAGAGGCAAACCGGGAAGAAATTGATGAAATTGTCTCAATTGCAGAAT
CATGCTTGAAAACAAAAGGAGAAGAGAGACCTACCATGAAAGAAGTAGAAATGAGGTTGCAGTTTGTTAGAACTATAAGA
CAAAGAAAGTGCCAACAATTTCCAGTAACAGAAGGAGAAATTGAGCATTTCCCATTCCCAAATACTAGTAACTCTTCAGA
TGGCAGGTTCAGCCATTCTACTGGTTTAACTTGCGACTCTGTCTCTGGAAGTTACAGCTTGGAGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis