Browse Element(s) Details


Os.54413.1.S1_at

Description gb:AK105117.1
DB_XREF= gi:32990326
TID=Os.54413.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A02, full insert sequence.
FL= gb:AK105117.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0453011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04500Os.47625.1.A1_s_at11/115+2058621..2060771Peroxidase family protein, expressed
LOC_Os05g04510Os.10130.3.S1_a_at11/115+2067056..2070012S-adenosylmethionine synthetase 1, putative, expressed
LOC_Os05g04520Os.11747.1.S1_at11/115+2074051..2078447Protein kinase domain containing protein, expressed
LOC_Os05g04530Os.54413.1.S1_at11/115+2078667..2082871expressed protein
LOC_Os05g04540OsAffx.26729.1.S1_at10/115+2089269..2091023expressed protein
LOC_Os05g04550Os.50890.1.S1_at11/115+2091611..2095106CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os05g04560Os.54026.1.S1_at9/115+2100882..2105585expressed protein
LOC_Os05g04560Os.17844.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560Os.52782.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560OsAffx.7578.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560Os.17844.1.S1_x_at1/115+2100882..2105585expressed protein
LOC_Os05g04570OsAffx.19451.1.S1_at11/115+2107268..2110831hypothetical protein
LOC_Os05g04570OsAffx.19451.2.S1_s_at11/115+2107268..2110831hypothetical protein
LOC_Os05g04570Os.56177.1.S1_at2/115+2107268..2110831hypothetical protein
LOC_Os05g04570OsAffx.19451.3.S1_x_at1/115+2107268..2110831hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54413.1.S1_at--7--2291Chr05:2079701..2079725 (25 bp)
AAAGCTTGAATTCTGCCTTCAGGAA
LOC_Os05g04530
Os.54413.1.S1_at--550--9631Chr05:2079683..2079707 (25 bp)
TCAGGAATCACGGTCCCAGATAAGA
LOC_Os05g04530
Os.54413.1.S1_at--223--8271Chr05:2079073..2079097 (25 bp)
GGCATGAAGCAACCCAGTGTCCCAT
LOC_Os05g04530
Os.54413.1.S1_at--250--1371Chr05:2079015..2079039 (25 bp)
AGAGCTTCAAGTTCATCGCCTCCAT
LOC_Os05g04530
Os.54413.1.S1_at--36--7091Chr05:2078990..2079014 (25 bp)
GTCAATGCTCGCACTAGTGATGCTC
LOC_Os05g04530
Os.54413.1.S1_at--527--10211Chr05:2078917..2078941 (25 bp)
TATTCCAGTGTTAGGTGAGCACCTT
LOC_Os05g04530
Os.54413.1.S1_at--74--5091Chr05:2078899..2078923 (25 bp)
GCACCTTGCTCATAGTCTATAGTTC
LOC_Os05g04530
Os.54413.1.S1_at--296--6931Chr05:2078852..2078876 (25 bp)
GTAGGTCATTGCTGCATGATCAGTC
LOC_Os05g04530
Os.54413.1.S1_at--1061--691Chr05:2078837..2078861 (25 bp)
ATGATCAGTCGTCAGATGATGCCCC
LOC_Os05g04530
Os.54413.1.S1_at--696--711Chr05:2078822..2078846 (25 bp)
ATGATGCCCCAACTGAATTTGCCGA
LOC_Os05g04530
Os.54413.1.S1_at--755--7331Chr05:2078762..2078786 (25 bp)
GTGCAGTTGCTGCTAGCTTATGTAA
LOC_Os05g04530
Target Sequence 
AAAGCTTGAATTCTGCCTTCAGGAATCACGGTCCCAGATAAGAAAACTTCAGAGNGCTGGTGAGAAAAGAGACAAGCAAC
TGAAGGAGCTGAAGGATCAGGTGGGCATGAAGCAACCCAGTGTCCCATACCGTGATGACAAGCACAACTTCTGGGAGAAC
CAGAGCTTCAAGTTCATCGCCTCCATGTCAATGCTCGCACTAGTGATGCTCNCAANGCGATGAAACAGCATCCTGTGTAA
AGAATGCTACTTAGTAGTATATTCCAGTGTTAGGTGAGCACCTTGCTCATAGTCTATAGTTCAGGAAGCCAGAGATGTAG
TCAAGTAGGTCATTGCTGCATGATCAGTCGTCAGATGATGCCCCAACTGAATTTGCCGACATCCAAGATTAGTCTGTAGT
ATTGNAGTACTGTAGTGCAGTTGCTGCTAGCTTATGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis