Browse Element(s) Details


Os.50890.1.S1_at

Description gb:AK059282.1
DB_XREF= gi:32969300
TID=Os.50890.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D05, full insert sequence.
FL= gb:AK100498.1 gb:AK059282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0455011/11CBL-interacting serine/threonine-protein kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04510Os.10130.3.S1_a_at11/115+2067056..2070012S-adenosylmethionine synthetase 1, putative, expressed
LOC_Os05g04520Os.11747.1.S1_at11/115+2074051..2078447Protein kinase domain containing protein, expressed
LOC_Os05g04530Os.54413.1.S1_at11/115+2078667..2082871expressed protein
LOC_Os05g04540OsAffx.26729.1.S1_at10/115+2089269..2091023expressed protein
LOC_Os05g04550Os.50890.1.S1_at11/115+2091611..2095106CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os05g04560Os.54026.1.S1_at9/115+2100882..2105585expressed protein
LOC_Os05g04560Os.17844.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560Os.52782.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560OsAffx.7578.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560Os.17844.1.S1_x_at1/115+2100882..2105585expressed protein
LOC_Os05g04570OsAffx.19451.1.S1_at11/115+2107268..2110831hypothetical protein
LOC_Os05g04570OsAffx.19451.2.S1_s_at11/115+2107268..2110831hypothetical protein
LOC_Os05g04570Os.56177.1.S1_at2/115+2107268..2110831hypothetical protein
LOC_Os05g04570OsAffx.19451.3.S1_x_at1/115+2107268..2110831hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50890.1.S1_at--935--3851Chr05:2092221..2092245 (25 bp)
CTGAGTCATTTATGGTGTCCGCCGA
LOC_Os05g04550
Os.50890.1.S1_at--299--7751Chr05:2092114..2092232 (25 bp)
GGTGTCCGCCGAGGTTTTTGAGCTT
LOC_Os05g04550
Os.50890.1.S1_at--328--4911Chr05:2092093..2092117 (25 bp)
GCTTGGCCCTTCTGTAAATGTTGTA
LOC_Os05g04550
Os.50890.1.S1_at--288--10411Chr05:2092064..2092088 (25 bp)
TTAGGAAGTCCAACGGAGACCCTGC
LOC_Os05g04550
Os.50890.1.S1_at--606--1931Chr05:2092052..2092076 (25 bp)
ACGGAGACCCTGCACTGTATAGACA
LOC_Os05g04550
Os.50890.1.S1_at--39--5651Chr05:2091935..2091957 (23 bp)
GACAGCTCTGTGAGAGGATCTCCAG
LOC_Os05g04550
Os.50890.1.S1_at--966--1931Chr05:2091873..2091897 (25 bp)
ACGGCATCGCTTGAGGATGATCTTC
LOC_Os05g04550
Os.50890.1.S1_at--459--1431Chr05:2091848..2091872 (25 bp)
AGAACAGCAATGCAGGGACGCCGCT
LOC_Os05g04550
Os.50890.1.S1_at--123--5811Chr05:2091832..2091856 (25 bp)
GACGCCGCTGTTCGCTTTGTAACGA
LOC_Os05g04550
Os.50890.1.S1_at--1047--3671Chr05:2091818..2091842 (25 bp)
CTTTGTAACGAATGCTGTGTTCTGC
LOC_Os05g04550
Os.50890.1.S1_at--308--8531Chr05:2091661..2091685 (25 bp)
TGGTTCAAAAACTAGCCACCGTTGT
LOC_Os05g04550
Target Sequence 
CTGAGTCATTTATGGTGTCCGCCGAGGTTTTTGAGCTTGGCCCTTCTGTAAATGTTGTAGAACTTAGGAAGTCCAACGGA
GACCCTGCACTGTATAGACAGCTCTGTGAGAGGATCTCCAGTGACATGGGGGCGCGCAACACGGAGCAGATCTTCNCAAC
GGCATCGCTTGAGGATGATCTTCAGAACAGCAATGCAGGGACGCCGCTGTTCGCTTTGTAACGAATGCTGTGTTCTGCAA
AACTGCAATGTTGTAGGATGATCTTAGGCAAGAGGATGTGTAGGAACATATTTGGTCAGGCATTTGGAGAAGAGATAAGA
CTTGAGAGGGTAGGATCATAGTAGTATATGATACAGTGTACAGAACCGAGTGGTTCAAAAACTAGCCACCGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis