Browse Element(s) Details


Os.17844.1.S1_at

Description gb:AK111288.1
DB_XREF= gi:32996497
TID=Os.17844.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17844 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-H11, full insert sequence.
FL= gb:AK100428.1 gb:AK111288.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g045601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04520Os.11747.1.S1_at11/115+2074051..2078447Protein kinase domain containing protein, expressed
LOC_Os05g04530Os.54413.1.S1_at11/115+2078667..2082871expressed protein
LOC_Os05g04540OsAffx.26729.1.S1_at10/115+2089269..2091023expressed protein
LOC_Os05g04550Os.50890.1.S1_at11/115+2091611..2095106CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os05g04560Os.54026.1.S1_at9/115+2100882..2105585expressed protein
LOC_Os05g04560Os.17844.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560Os.52782.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560OsAffx.7578.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560Os.17844.1.S1_x_at1/115+2100882..2105585expressed protein
LOC_Os05g04570OsAffx.19451.1.S1_at11/115+2107268..2110831hypothetical protein
LOC_Os05g04570OsAffx.19451.2.S1_s_at11/115+2107268..2110831hypothetical protein
LOC_Os05g04570Os.56177.1.S1_at2/115+2107268..2110831hypothetical protein
LOC_Os05g04570OsAffx.19451.3.S1_x_at1/115+2107268..2110831hypothetical protein
LOC_Os05g04584Os.9847.1.S1_at11/115+2121913..2128292Transferase family protein, expressed
LOC_Os05g04584Os.55688.1.S1_at1/115+2121913..2128292Transferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17844.1.S1_at--650--9572Chr12:7387365..7387389 (25 bp)
TCTTCTCCCTTCTATCTCCACTATT
NONE
Os.17844.1.S1_at--241--4732Chr12:7387522..7387546 (25 bp)
GCTCATTGTAAGTGTCGACGGCGGC
NONE
Os.17844.1.S1_at--958--3752Chr12:7387523..7387547 (25 bp)
CTCATTGTAAGTGTCGACGGCGGCC
NONE
Os.17844.1.S1_at--104--3472Chr12:7387665..7387685 (21 bp)
CAGTGATCCAGGGTCGTTGGGTCTG
NONE
Os.17844.1.S1_at--747--9392Chr12:7387674..7387698 (25 bp)
TCGTTGGGTCTGTTGAGCTCGGTAT
NONE
Os.17844.1.S1_at--637--1412Chr12:7387729..7387753 (25 bp)
AGAAACGTGTTAGACACGGCCTCCT
NONE
Os.17844.1.S1_at--337--5552Chr12:7387730..7387754 (25 bp)
GAAACGTGTTAGACACGGCCTCCTC
NONE
Os.17844.1.S1_at--535--5133Chr12:7387893..7387917 (25 bp)
GCAAATTGATGAAGGTAGGGATGAT
NONE
Os.17844.1.S1_at--301--6272Chr12:7387920..7387944 (25 bp)
GATGTGTATATTGAGTATGAATGCA
NONE
Os.17844.1.S1_at--401--5272Chr12:7387938..7387962 (25 bp)
GAATGCATATGCACTTTTGCGTGTG
NONE
Os.17844.1.S1_at--811--3012Chr12:7387939..7387963 (25 bp)
AATGCATATGCACTTTTGCGTGTGT
NONE
Target Sequence 
TCTTCTCCCTTCTATCTCCACTATTCCTTTGCAGATCGGCGGAGGCCTGCAACAACAACGGCCGCGCGGGCGAGCAATCG
AGGAGGCCGGGAATCACCAGATCCGGAAGGACGGCGGCCCGATTCGGAGAGGGAGCAACCCGATCTGTGTCATTGAGGCT
CATTGTAAGTGTCGACGGCGGCCGTTCCTTCACAGTGATCCAGGGTCGTTGGGTCTGTTGAGCTCGGTATCGACGGCAGC
AGTAGCTCGGGCAAGATGGAAGAAACGTGTTAGACACGGCCTCCTCCGAGAGCATACACCAGCGACGTGCAGGAGGCCGA
GGCCAAAGCCGATCTTCCCCAACCCCATCTGGCATTATAACTTGTAAGTTTTTGTTCTTTTTGGTGTTCTTGGTAGACCN
ATGAAAATGGTGATGGTCTATCGTGCAAATTGATGAAGGTAGGGATGATATGATGTGTATATTGAGTATGAATGCATATG
CACTTTTGCGTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis