Browse Element(s) Details


Os.9847.1.S1_at

Description gb:AK069868.1
DB_XREF= gi:32979892
TID=Os.9847.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9847 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039O14, full insert sequence.
FL= gb:AK069868.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0458411/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04560Os.54026.1.S1_at9/115+2100882..2105585expressed protein
LOC_Os05g04560Os.17844.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560Os.52782.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560OsAffx.7578.1.S1_at1/115+2100882..2105585expressed protein
LOC_Os05g04560Os.17844.1.S1_x_at1/115+2100882..2105585expressed protein
LOC_Os05g04570OsAffx.19451.1.S1_at11/115+2107268..2110831hypothetical protein
LOC_Os05g04570OsAffx.19451.2.S1_s_at11/115+2107268..2110831hypothetical protein
LOC_Os05g04570Os.56177.1.S1_at2/115+2107268..2110831hypothetical protein
LOC_Os05g04570OsAffx.19451.3.S1_x_at1/115+2107268..2110831hypothetical protein
LOC_Os05g04584Os.9847.1.S1_at11/115+2121913..2128292Transferase family protein, expressed
LOC_Os05g04584Os.55688.1.S1_at1/115+2121913..2128292Transferase family protein, expressed
LOC_Os05g04600Os.55031.2.S1_x_at11/115+2143260..2144910CjMDR1, putative, expressed
LOC_Os05g04610Os.27393.1.S1_s_at11/115+2146997..2149527ABC transporter family protein, expressed
LOC_Os05g04610Os.27393.1.S1_a_at11/115+2146997..2149527ABC transporter family protein, expressed
LOC_Os05g04620Os.5191.1.S1_at10/115+2150222..2152229expressed protein
LOC_Os05g04630Os.4168.1.S1_s_at11/115+2152939..2157111Aspartic proteinase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9847.1.S1_at--420--4571Chr05:2127792..2127816 (25 bp)
GCGCGCGCGTCATGACCATGTGCGT
LOC_Os05g04584
Os.9847.1.S1_at--705--4531Chr05:2127866..2127890 (25 bp)
GCCGCCAACTAGCTACACATGCTTA
LOC_Os05g04584
Os.9847.1.S1_at--158--4852Chr05:2127877..2127901 (25 bp)
GCTACACATGCTTATACTATCATAT
LOC_Os05g04584
Os.9847.1.S1_at--1087--9591Chr05:2127896..2127920 (25 bp)
TCATATCATGCACACTAGTTAATTA
LOC_Os05g04584
Os.9847.1.S1_at--212--9751Chr05:2127959..2127983 (25 bp)
TAATCATCAAGAGGGACAGTGCAAT
LOC_Os05g04584
Os.9847.1.S1_at--115--3611Chr05:2127992..2128016 (25 bp)
CATTGTCTCATGCAACTCTGATCGA
LOC_Os05g04584
Os.9847.1.S1_at--834--7391Chr05:2128030..2128054 (25 bp)
GTGTGTACGTAATTCGGCTGGTTAA
LOC_Os05g04584
Os.9847.1.S1_at--11--3951Chr05:2128044..2128068 (25 bp)
CGGCTGGTTAATAATGGATTTGCAA
LOC_Os05g04584
Os.9847.1.S1_at--287--3171Chr05:2128199..2128223 (25 bp)
CAATTTGGGTTGTGCTTTAGTCGGT
LOC_Os05g04584
Os.9847.1.S1_at--755--6631Chr05:2128207..2128231 (25 bp)
GTTGTGCTTTAGTCGGTCTCTAATT
LOC_Os05g04584
Os.9847.1.S1_at--759--2251Chr05:2128233..2128257 (25 bp)
AAATATATGGTACCCTCTGAATTAA
LOC_Os05g04584
Target Sequence 
GCGCGCGCGTCATGACCATGTGCGTCGAGGAGGCGCACTTGCCGGAGTTCAGGGACCAGATGAACGCCTTCGCCGCCGCC
AACTAGCTACACATGCTTATACTATCATATCATGCACACTAGTTAATTATATTAATTACAGTAATTATAATCCTTATTAG
TATTAATTAATCATCAAGAGGGACAGTGCAATTAATTAAGCATTGTCTCATGCAACTCTGATCGATCGATCGATCGGTGT
GTGTACGTAATTCGGCTGGTTAATAATGGATTTGCAACTTCCTTCCCCCGCAGTAGACATNTCTAGNTAATTGNGTTGTG
TAAGAGAAATTATTTTTCCTTCTAATATATTGACNTGTAATTGTNTTGCGCGTTCACGAAAAATAATGGATTTGCAAGTA
GTATTAACAATTTGGGTTGTGCTTTAGTCGGTCTCTAATTAAAATATATGGTACCCTCTGAATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis