Browse Element(s) Details


Os.5191.1.S1_at

Description gb:AK067812.1
DB_XREF= gi:32977830
TID=Os.5191.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.5191 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013114P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114P12, full insert sequence.
FL= gb:AK067812.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0462010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04584Os.9847.1.S1_at11/115+2121913..2128292Transferase family protein, expressed
LOC_Os05g04584Os.55688.1.S1_at1/115+2121913..2128292Transferase family protein, expressed
LOC_Os05g04600Os.55031.2.S1_x_at11/115+2143260..2144910CjMDR1, putative, expressed
LOC_Os05g04610Os.27393.1.S1_s_at11/115+2146997..2149527ABC transporter family protein, expressed
LOC_Os05g04610Os.27393.1.S1_a_at11/115+2146997..2149527ABC transporter family protein, expressed
LOC_Os05g04620Os.5191.1.S1_at10/115+2150222..2152229expressed protein
LOC_Os05g04630Os.4168.1.S1_s_at11/115+2152939..2157111Aspartic proteinase precursor, putative, expressed
LOC_Os05g04640OsAffx.14545.1.S1_x_at11/115+2157537..2162957WRKY DNA binding domain containing protein, expressed
LOC_Os05g04650Os.53713.1.S1_at11/115+2172886..2174485expressed protein
LOC_Os05g04660OsAffx.4251.1.S1_at10/115+2174462..2175921uncharacterized domain 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5191.1.S1_at--244--5931Chr05:2151635..2151659 (25 bp)
GAGCACCGTTTTCCCTATAATACTG
LOC_Os05g04620
Os.5191.1.S1_at--1152--1111Chr05:2151677..2151701 (25 bp)
AGTGACACTGGAGCCATGCCAAGAT
LOC_Os05g04620
Os.5191.1.S1_at--26--6351Chr05:2151699..2151723 (25 bp)
GATGCTCAGATCTCATCAGAACCTG
LOC_Os05g04620
Os.5191.1.S1_at--389--3091Chr05:2151726..2151750 (25 bp)
AATACAATGTTGTCCACCACTGCTA
LOC_Os05g04620
Os.5191.1.S1_at--113--2291Chr05:2151900..2151924 (25 bp)
AAATGCGGTCTAGGCCCGAATGTGC
LOC_Os05g04620
Os.5191.1.S1_at--5--3031NONE
AATCCCCTCTTTCATCGGAGTAGTG
NONE
Os.5191.1.S1_at--319--731Chr05:2151988..2152012 (25 bp)
ATGTTGGCACCATAGCTTCAGGCTT
LOC_Os05g04620
Os.5191.1.S1_at--774--8611Chr05:2152039..2152063 (25 bp)
TGGTGAACAACTAGCCCAACCTTTG
LOC_Os05g04620
Os.5191.1.S1_at--975--2631Chr05:2152056..2152080 (25 bp)
AACCTTTGCCTTACCTATGATGATG
LOC_Os05g04620
Os.5191.1.S1_at--271--2331Chr05:2152111..2152135 (25 bp)
AAAGTATGGTATAATCACGCCCCTG
LOC_Os05g04620
Os.5191.1.S1_at--709--3351Chr05:2152126..2152150 (25 bp)
CACGCCCCTGCTAAAGTTGATGTAA
LOC_Os05g04620
Target Sequence 
GAGCACCGTTTTCCCTATAATACTGCCCCAGATTCCAGAATCAGTGACACTGGAGCCATGCCAAGATGCTCAGATCTCAT
CAGAACCTGCAAATACAATGTTGTCCACCACTGCTACCATTGCAGTAGTTGAGAAGCCGATGACGAACAGAATTGAGGTC
TGCATGGGAGGCAAATGCAAGAAATCGGGCTCCCTCGCGGTGCTGCAGGAGTTCGAGAAGAAGGTGGGCACTGATGGTGC
GGTCGTTGGCTGCAAATGCCTGGGGAAATGCGGTCTAGGCCCGAATGTGCGGCTCCGGAGCGAAGGCGCTGCACAGAAGA
AGAATCCCCTCTTTCATCGGAGTAGTGTTAGAGGATGTTGGCACCATAGCTTCAGGCTTGTTTGGAGGCGGTGATGACCT
GGGCATGGTGAACAACTAGCCCAACCTTTGCCTTACCTATGATGATGTGTACTGAGCAATAGTAGTATTACAGCAAAAAA
GTATGGTATAATCACGCCCCTGCTAAAGTTGATGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis