Browse Element(s) Details


OsAffx.14545.1.S1_x_at

Description tigr:9633.m00395
TID=OsAffx.14545.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0464011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04600Os.55031.2.S1_x_at11/115+2143260..2144910CjMDR1, putative, expressed
LOC_Os05g04610Os.27393.1.S1_s_at11/115+2146997..2149527ABC transporter family protein, expressed
LOC_Os05g04610Os.27393.1.S1_a_at11/115+2146997..2149527ABC transporter family protein, expressed
LOC_Os05g04620Os.5191.1.S1_at10/115+2150222..2152229expressed protein
LOC_Os05g04630Os.4168.1.S1_s_at11/115+2152939..2157111Aspartic proteinase precursor, putative, expressed
LOC_Os05g04640OsAffx.14545.1.S1_x_at11/115+2157537..2162957WRKY DNA binding domain containing protein, expressed
LOC_Os05g04650Os.53713.1.S1_at11/115+2172886..2174485expressed protein
LOC_Os05g04660OsAffx.4251.1.S1_at10/115+2174462..2175921uncharacterized domain 1 family protein, expressed
LOC_Os05g04670NANA5+2185023..2186785hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14545.1.S1_x_at--934--10411Chr05:2157831..2157855 (25 bp)
TTATGCCTTCTCCTCATTGCCGTTC
LOC_Os05g04640
OsAffx.14545.1.S1_x_at--533--9251Chr05:2157821..2157845 (25 bp)
TCCTCATTGCCGTTCTCGATGTACG
LOC_Os05g04640
OsAffx.14545.1.S1_x_at--64--4251Chr05:2157812..2157836 (25 bp)
CCGTTCTCGATGTACGGCGCCGGCG
LOC_Os05g04640
OsAffx.14545.1.S1_x_at--779--7511Chr05:2157740..2157764 (25 bp)
GTGGAGACGATGACCGCCGCGATCA
LOC_Os05g04640
OsAffx.14545.1.S1_x_at--454--8551Chr05:2157739..2157763 (25 bp)
TGGAGACGATGACCGCCGCGATCAC
LOC_Os05g04640
OsAffx.14545.1.S1_x_at--598--6311Chr05:2157732..2157756 (25 bp)
GATGACCGCCGCGATCACCAGGGAC
LOC_Os05g04640
OsAffx.14545.1.S1_x_at--694--4571Chr05:2157680..2157704 (25 bp)
GCGCTCTCCTCGATCATGGCGGGAG
LOC_Os05g04640
OsAffx.14545.1.S1_x_at--533--3771Chr05:2157677..2157701 (25 bp)
CTCTCCTCGATCATGGCGGGAGGCG
LOC_Os05g04640
OsAffx.14545.1.S1_x_at--427--8011Chr05:2157659..2157683 (25 bp)
GGAGGCGGCGCCCAAGCTCGAACAC
LOC_Os05g04640
OsAffx.14545.1.S1_x_at--12--9371Chr05:2157642..2157666 (25 bp)
TCGAACACCTCCACGCGGCGGGAGT
LOC_Os05g04640
OsAffx.14545.1.S1_x_at--1101--5751Chr05:2157617..2157641 (25 bp)
GACGCCGCCGGAGACATCAACGGAG
LOC_Os05g04640
Target Sequence 
TTATGCCTTCTCCTCATTGCCGTTCTCGATGTACGGCGCCGGCGGCGGCTCGCACCGGCCGCCCGTCGTCCTGCCCCCGC
CGTCGTCGGTGGTGGAGACGATGACCGCCGCGATCACCAGGGACCCCAACTTCACCACGGCGGTGGCGGCCGCGCTCTCC
TCGATCATGGCGGGAGGCGGCGCCCAAGCTCGAACACCTCCACGCGGCGGGAGTGACGCCGCCGGAGACATCAACGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14545.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis