Browse Element(s) Details


Os.53713.1.S1_at

Description gb:AK099427.1
DB_XREF= gi:32984636
TID=Os.53713.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53713 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013011J07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013011J07, full insert sequence.
FL= gb:AK099427.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0465011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04610Os.27393.1.S1_s_at11/115+2146997..2149527ABC transporter family protein, expressed
LOC_Os05g04610Os.27393.1.S1_a_at11/115+2146997..2149527ABC transporter family protein, expressed
LOC_Os05g04620Os.5191.1.S1_at10/115+2150222..2152229expressed protein
LOC_Os05g04630Os.4168.1.S1_s_at11/115+2152939..2157111Aspartic proteinase precursor, putative, expressed
LOC_Os05g04640OsAffx.14545.1.S1_x_at11/115+2157537..2162957WRKY DNA binding domain containing protein, expressed
LOC_Os05g04650Os.53713.1.S1_at11/115+2172886..2174485expressed protein
LOC_Os05g04660OsAffx.4251.1.S1_at10/115+2174462..2175921uncharacterized domain 1 family protein, expressed
LOC_Os05g04670NANA5+2185023..2186785hypothetical protein
LOC_Os05g04680Os.50346.1.S1_at11/115+2190908..2191625expressed protein
LOC_Os05g04690Os.54044.1.S1_at11/115+2195575..2196641Basic endochitinase 2 precursor, putative, expressed
LOC_Os05g04690Os.36593.2.S1_x_at1/115+2195575..2196641Basic endochitinase 2 precursor, putative, expressed
LOC_Os05g04700Os.13968.1.S1_a_at6/115+2197918..2198479Uncharacterized protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53713.1.S1_at--537--8671Chr05:2173733..2173754 (22 bp)
TGTGGTGATGAGTTCCTTTCTGTCA
LOC_Os05g04650
Os.53713.1.S1_at--716--4431Chr05:2173758..2173782 (25 bp)
GCCATCTTCTCATTTCCAACATGGA
LOC_Os05g04650
Os.53713.1.S1_at--255--7851Chr05:2173926..2173950 (25 bp)
GGTACCAGGAACACTATCTTCACTA
LOC_Os05g04650
Os.53713.1.S1_at--928--9831Chr05:2173949..2173973 (25 bp)
TAAAGCTATCATGCCTGGAGATCAA
LOC_Os05g04650
Os.53713.1.S1_at--936--5171Chr05:2174159..2174183 (25 bp)
GCAAGATCACAGACTGGATGGCCAA
LOC_Os05g04650
Os.53713.1.S1_at--714--7831Chr05:2174224..2174248 (25 bp)
GGTAACTCTTAGCTTATCACTCTTG
LOC_Os05g04650
Os.53713.1.S1_at--490--1551Chr05:2174234..2174258 (25 bp)
AGCTTATCACTCTTGCTGAAATGCA
LOC_Os05g04650
Os.53713.1.S1_at--669--792Chr05:2174274..2174298 (25 bp)
ATGTGTGTCACAGTAGCCCTTGACG
LOC_Os05g04650
Os.53713.1.S1_at--81--4111Chr05:2174297..2174321 (25 bp)
CGACTTGCAGCCACATCAAACATGT
LOC_Os05g04650
Os.53713.1.S1_at--549--1171Chr05:2174331..2174355 (25 bp)
AGTACCAAACTGTGCCTTGAGCCAA
LOC_Os05g04650
Os.53713.1.S1_at--626--4311Chr05:2174345..2174369 (25 bp)
CCTTGAGCCAAGACCTTCCATAAAA
LOC_Os05g04650
Target Sequence 
TGTGGTGATGAGTTCCTTTCTGTCACTGGCCATCTTCTCATTTCCAACATGGAGAGCTCTGAAGCGATTGGAAATTGCTG
TGCATAAATTGTCGAAAGTAGTTGCAGAAGAGGTACCAGGAACACTATCTTCACTAAAGCTATCATGCCTGGAGATCAAT
GATTTAACTAGCCAACTAAAGAACTTCAGACAAAGGCTCATGATAAATATATTTGGAAACAACAGTAGTGTTGATGCAAG
ATCACAGACTGGATGGCCAAAACGGGGAAAAATATGACTTATTTAACCTGTAAGTTTTATGGTAACTCTTAGCTTATCAC
TCTTGCTGAAATGCATTATCAAGTCGATACATGTGTGTCACAGTAGCCCTTGACGACTTGCAGCCACATCAAACATGTTG
TGATGCAAGTACCAAACTGTGCCTTGAGCCAAGACCTTCCATAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis