Browse Element(s) Details


OsAffx.4251.1.S1_at

Description tigr:9633.m00397
TID=OsAffx.4251.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F11A17.13
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0466010/11uncharacterized domain 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04610Os.27393.1.S1_s_at11/115+2146997..2149527ABC transporter family protein, expressed
LOC_Os05g04610Os.27393.1.S1_a_at11/115+2146997..2149527ABC transporter family protein, expressed
LOC_Os05g04620Os.5191.1.S1_at10/115+2150222..2152229expressed protein
LOC_Os05g04630Os.4168.1.S1_s_at11/115+2152939..2157111Aspartic proteinase precursor, putative, expressed
LOC_Os05g04640OsAffx.14545.1.S1_x_at11/115+2157537..2162957WRKY DNA binding domain containing protein, expressed
LOC_Os05g04650Os.53713.1.S1_at11/115+2172886..2174485expressed protein
LOC_Os05g04660OsAffx.4251.1.S1_at10/115+2174462..2175921uncharacterized domain 1 family protein, expressed
LOC_Os05g04670NANA5+2185023..2186785hypothetical protein
LOC_Os05g04680Os.50346.1.S1_at11/115+2190908..2191625expressed protein
LOC_Os05g04690Os.54044.1.S1_at11/115+2195575..2196641Basic endochitinase 2 precursor, putative, expressed
LOC_Os05g04690Os.36593.2.S1_x_at1/115+2195575..2196641Basic endochitinase 2 precursor, putative, expressed
LOC_Os05g04700Os.13968.1.S1_a_at6/115+2197918..2198479Uncharacterized protein family protein, expressed
LOC_Os05g04710OsAffx.4252.1.S1_x_at11/115+2200602..2203544incomplete root hair elongation, putative

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Gene Ontology Classification
GO idTypeName
GO:0016291molecular_functionacyl-CoA thioesterase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4251.1.S1_at--963--3011Chr05:2175825..2175849 (25 bp)
AATGCTCTGCACTCCCTGGGAATGG
LOC_Os05g04660
OsAffx.4251.1.S1_at--541--3871Chr05:2175810..2175834 (25 bp)
CTGGGAATGGAGTTCACCACCATCA
LOC_Os05g04660
OsAffx.4251.1.S1_at--162--4611Chr05:2175515..2175539 (25 bp)
GCGAGACCGTCCAGGCGAAGGCCAA
LOC_Os05g04660
OsAffx.4251.1.S1_at--606--5291Chr05:2175499..2175523 (25 bp)
GAAGGCCAAGCCCATGCAGCTCGGC
LOC_Os05g04660
OsAffx.4251.1.S1_at--260--9451Chr05:2175237..2175503 (25 bp)
TCGGCCGTACCATCCAGGTTTGGGA
LOC_Os05g04660
OsAffx.4251.1.S1_at--41--1731NONE
ACCATCCAGGTTTGGGAGGTCCAGA
NONE
OsAffx.4251.1.S1_at--460--7951Chr05:2174571..2174595 (25 bp)
GGATAGATCCTTCCACATCAGAGTG
LOC_Os05g04660
OsAffx.4251.1.S1_at--826--6092Chr11:23298366..23298386 (21 bp)
GAGTGCAAACATCTAGTGTCAACAG
NONE
OsAffx.4251.1.S1_at--5--1111Chr05:2174537..2174561 (25 bp)
AGTGTCAACAGCAAGGGTTACCCTA
LOC_Os05g04660
OsAffx.4251.1.S1_at--192--6771Chr05:2174521..2174545 (25 bp)
GTTACCCTACTATGCAACCTACCAA
LOC_Os05g04660
OsAffx.4251.1.S1_at--319--2471Chr05:2174498..2174522 (25 bp)
AACACCAGAGGATTTGAAGCACTAT
LOC_Os05g04660
Target Sequence 
AATGCTCTGCACTCCCTGGGAATGGAGTTCACCACCATCACCGCCGGCGAGGTCGTCGGCCGCCTCCTCGTCACCGCCAC
CTGCTGCCAGCCGTTCAAGGTGCTCGGCGGCGGCGTGTCGGCGCTGATGGCGGAGGCGGCGGCGAGCATCGGCGGCTACA
TCGCGTCCGGCTACCGGAGGGTCGCCGGCGTGCAGCTGTCCATCAACCACATCAGGCCGGCCCACCTCGGCGAGACCGTC
CAGGCGAAGGCCAAGCCCATGCAGCTCGGCCGTACCATCCAGGTTTGGGAGGTCCAGATATGGCGGATAGATCCTTCCAC
ATCAGAGTGCAAACATCTAGTGTCAACAGCAAGGGTTACCCTACTATGCAACCTACCAACACCAGAGGATTTGAAGCACT
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis