Browse Element(s) Details


Os.13968.1.S1_a_at

Description gb:AK119249.1
DB_XREF= gi:37988872
TID=Os.13968.1
CNT=209
FEA=FLmRNA
TIER=FL+Stack
STK=67
UG=Os.13968 (NCBI UniGene Cluster)
UG_TITLE=ICT mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-G07, full insert sequence.
FL= gb:AK119249.1 gb:AY554051.1 gb:AF503583.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g047006/11Uncharacterized protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04650Os.53713.1.S1_at11/115+2172886..2174485expressed protein
LOC_Os05g04660OsAffx.4251.1.S1_at10/115+2174462..2175921uncharacterized domain 1 family protein, expressed
LOC_Os05g04670NANA5+2185023..2186785hypothetical protein
LOC_Os05g04680Os.50346.1.S1_at11/115+2190908..2191625expressed protein
LOC_Os05g04690Os.54044.1.S1_at11/115+2195575..2196641Basic endochitinase 2 precursor, putative, expressed
LOC_Os05g04690Os.36593.2.S1_x_at1/115+2195575..2196641Basic endochitinase 2 precursor, putative, expressed
LOC_Os05g04700Os.13968.1.S1_a_at6/115+2197918..2198479Uncharacterized protein family protein, expressed
LOC_Os05g04710OsAffx.4252.1.S1_x_at11/115+2200602..2203544incomplete root hair elongation, putative
LOC_Os05g04720NANA5+2204438..2204650hypothetical protein
LOC_Os05g04730OsAffx.19542.3.S1_x_at5/115+2211752..2215974retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0042538biological_processhyperosmotic salinity response
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13968.1.S1_a_at--3--6131Chr05:2198492..2198516 (25 bp)
GAGTGTTCATCTACTATCAATTTTT
NONE
Os.13968.1.S1_a_at--1150--7611Chr05:2198450..2198474 (25 bp)
GGGAACGGCGAACTGCATCGACATC
LOC_Os05g04700
Os.13968.1.S1_a_at--952--9951Chr05:2198189..2198213 (25 bp)
TACGCCATCACCAAGTAATTCATCA
LOC_Os05g04700
Os.13968.1.S1_a_at--182--1071Chr05:2198010..2198034 (25 bp)
AGGGATGGGCTCCAAACCGCTTCAT
LOC_Os05g04700
Os.13968.1.S1_a_at--184--9611Chr05:2197989..2198013 (25 bp)
TCATCTATCTTCTCGATTGCCGTGT
LOC_Os05g04700
Os.13968.1.S1_a_at--91--91Chr05:2197974..2197998 (25 bp)
ATTGCCGTGTGCTTGTTGGAATTTG
LOC_Os05g04700
Os.13968.1.S1_a_at--346--3151Chr05:2197929..2197953 (25 bp)
AATTCAGTCCTGAGTGCTCCAATTC
LOC_Os05g04700
Os.13968.1.S1_a_at--545--1131Chr05:2197917..2197941 (25 bp)
AGTGCTCCAATTCTTGTCATCTAGT
NONE
Os.13968.1.S1_a_at--911--4331Chr05:2197876..2197900 (25 bp)
CCAGTCTCTTCCTCTAATGTTTGAT
NONE
Os.13968.1.S1_a_at--466--5251Chr05:2197843..2197867 (25 bp)
GAATCTCTTGCTGTTAATCTGTTGC
NONE
Os.13968.1.S1_a_at--394--9071Chr05:2197821..2197845 (25 bp)
TGCTTTCGTGTGAATAAGCTCCCCT
NONE
Target Sequence 
GAGTGTTCATCTACTATCAATTTTTGATCGAGGAGAGATGGCGGGAACGGCGAACTGCATCGACATCCTCATCGCCATCA
TCCTCCCGCCCCTCGGCGTCTTCCTCAAGTTCGGATGCGGGCATGAGTTCTGGATCTGCCTGTTGCTCACCTTCCTCGGC
TACATCCCCGGCATCATNNNCTACGCCATCTACGCCATCACCAAGTAATTCATCATTAGTTACTACATCATCAACCAAAT
CCTCAAGGGATGGGCTCCAAACCGCTTCATCTATCTTCTCGATTGCCGTGTGCTTGTTGGAATTTGGAAATGATATATGC
ATCCAAAATTCAGTCCTGAGTGCTCCAATTCTTGTCATCTAGTCATTTTCAATGTCCCCCCAGTCTCTTCCTCTAATGTT
TGATGATATGTAGAATCTCTTGCTGTTAATCTGTTGCTTTCGTGTGAATAAGCTCCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13968.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis